phenopackets/phenopacket-format

Issues

• Metadata.html

  #97 opened 5 years ago by pnrobinson
  0

• Use of evidence codes

  #86 opened 8 years ago by mcourtot
  2

• Add a JSON-LD context file

  #40 opened 9 years ago by cmungall
  15

• Help with capturing some statements in PXF

  #94 opened 8 years ago by tudorgroza
  1

• Info field in PXF?

  #90 opened 8 years ago by mcourtot
  1

• Is generated protobuf schema useful?

  #73 opened 8 years ago by heuermh
  2

• Back reference to original sample ID from PXF?

  #91 opened 8 years ago by mcourtot
  0

• patient history representation

  #93 opened 8 years ago by mellybelly
  0

• modeling cohort, no individual data available?

  #92 opened 8 years ago by siiraa
  2

• Document relationship to minimal information efforts such as MIAPPE

  #89 opened 8 years ago by cmungall
  0

• Type of 'entity'

  #87 opened 8 years ago by mcourtot
  1

• Add "sample" type for entities

  #88 opened 8 years ago by mcourtot
  0

• make metabolomics example

  #85 opened 8 years ago by mellybelly
  0

• Define mapping to a disease association file (DAF)

  #84 opened 8 years ago by cmungall
  0

• Add doc for how species vs. organism instances are represented

  #80 opened 8 years ago by mellybelly
  1

• date/time formats

  #75 opened 8 years ago by mbaudis
  1

• Rename 'type'

  #78 opened 8 years ago by mcourtot
  14

• doi link is broken

  #79 opened 8 years ago by harryhoch
  0

• Add example for representing when an entity is a model of a disease

  #77 opened 8 years ago by cmungall
  0

• Map to RSML

  #76 opened 8 years ago by cmungall
  0

• Add links to presentations in README

  #74 opened 8 years ago by cmungall
  0

• Check hypoglycemia quantitative example

  #72 opened 8 years ago by cmungall
  1

• Clarify our use of the term phenotype

  #71 opened 8 years ago by cmungall
  0

• Investigate Schema Salad

  #70 opened 8 years ago by tetron
  0

• phenopackets conversion to CDISC/ODM

  #69 opened 9 years ago by mellybelly
  0

• Define mapping from PomBase PAF

  #67 opened 9 years ago by cmungall
  7

• set up user group email list

  #68 opened 9 years ago by mellybelly
  0

• Ensure molecular phenotypes are representable

  #51 opened 9 years ago by cmungall
  8

• JSON-LD context syntax, precedence

  #65 opened 9 years ago by balhoff
  13

• Add example for exposure assayed by metabolites

  #66 opened 9 years ago by cmungall
  0

• Need logo

  #62 opened 9 years ago by mellybelly
  8

• Flags for phenopacket types (manual, automatic, others?)

  #52 opened 9 years ago by jmcmurry
  4

• Add doc/example for ICPHT

  #61 opened 9 years ago by mellybelly
  2

• Add version info to JSON Schema, and implement a procedure to ensure in sync with reference implementation

  #60 opened 9 years ago by cmungall
  3

• Add CONTRIBUTING.md, and make contact info more explicit

  #59 opened 9 years ago by cmungall
  0

• Revise documentation on local identifiers in wiki

  #58 opened 9 years ago by cmungall
  2

• Evaluate protobuf

  #49 opened 9 years ago by cmungall
  1

• Add monarch links/screenshots for export phenopacket button

  #57 opened 9 years ago by cmungall
  0

• normalize documentation

  #56 opened 9 years ago by harryhoch
  2

• provide a top level entry page

  #53 opened 9 years ago by cmungall
  6

• Remove redundancy in JSON-schema

  #55 opened 9 years ago by cmungall
  1

• Extend, revise and synchronize examples

  #54 opened 9 years ago by cmungall
  0

• variant

  #45 opened 9 years ago by pnrobinson
  1

• phesub-model.md file mentioned everywhere doesn't exist

  #46 opened 9 years ago by rohangoel96
  0

• Add JSON-Schema validator to travis

  #41 opened 9 years ago by cmungall
  3

• GSoC 2016 @ ga4gh.org

  #47 opened 9 years ago by rohangoel96
  1

• consider RTD for doucmentaton

  #48 opened 9 years ago by cmungall
  0

• relationship to json:API

  #39 opened 9 years ago by mjy
  2

• Document strategy for implementation in APIs

  #43 opened 9 years ago by cmungall
  0

• Automate generation of documentation from schema

  #42 opened 9 years ago by cmungall
  0