philippbayer
Using bioinformatics & interpretable AI to help the ocean at @MinderooFoundation OceanOmics
University of Western AustraliaPerth, Australia
Pinned Repositories
Bioinformatics-tools
Small repo with tiny scripts used in bioinformatics
CV
My curriculum vitae.
Goodreads_visualization
A Jupyter notebook where I play with my Goodreads data
orthomclToVenn
Creates Venn diagrams for OrthoMCL output
R_gene_analysis
Linking disease resistance gene numbers with yield in soybean
submission_checklist
A checklist to help you avoid all those minor errors when submitting a scientific manuscript
Things-a-scientist-is-suppposed-to-know
A comprehensive and long list of things a modern scientist is supposed to know
turbo-shame
Once upon a time, there was a bioinformatics summer project which involved the translation of HIV and SIV nucleotide sequences. It was for @gedankenstuecke and me the first time we coded for longer than 5 lines. This is it. Warning: It's terrible.
philippbayer's Repositories
philippbayer/Things-a-scientist-is-suppposed-to-know
A comprehensive and long list of things a modern scientist is supposed to know
philippbayer/submission_checklist
A checklist to help you avoid all those minor errors when submitting a scientific manuscript
philippbayer/Goodreads_visualization
A Jupyter notebook where I play with my Goodreads data
philippbayer/CV
My curriculum vitae.
philippbayer/R_gene_analysis
Linking disease resistance gene numbers with yield in soybean
philippbayer/dirty_data
Dirty data to teach data cleaning in R
philippbayer/OcOmCompareAquamaps
philippbayer/snpr
The sources of the openSNP website
philippbayer/Amphibolis_Posidonia_Comparison
philippbayer/ARC_Friend
Takes a ORCID exported bibliography and puts it into a nice format for the ROPE section of an ARC application
philippbayer/atlas
ATLAS - Three commands to start analyzing your metagenome data
philippbayer/biobeaker_testing
Testing biobeaker models!
philippbayer/blerg
the blerg
philippbayer/Brassica_oleracea_rapa_napus_code
Code for the Brassica oleracea/rapa/napus genomic comparison
philippbayer/chat-langchain-readthedocs
philippbayer/configs
Config files used to define parameters specific to compute environments at different Institutions
philippbayer/dotfiles
Just a couple of dotfiles so I can git clone from work, take elements as needed :)
philippbayer/github-issue-templates
:symbols: A collection of GitHub issue and pull request templates
philippbayer/LCA_With_WoRMS
Calculating LCAs using WoRMS
philippbayer/learning_docker
Getting started with Docker
philippbayer/Minderoo_Foundation-OceanOmics-AmpliconReference
philippbayer/OceanOmics-amplicon
A pipeline to analyse marine fish amplicon data
philippbayer/OceanOmics-classifier-comparison
Comparing eDNA taxonomic classifiers
philippbayer/OceanOmics-ENAUploads
This keeps track of OceanOmics' ENA uploads; notably, the settings used and the returned statuses and IDs
philippbayer/philippbayer
philippbayer/resbaz2021
philippbayer/rockart_mca_ca
philippbayer/Supercharge_your_research_talk_1st_March_2023
A talk on my journey from regular biologist to data person
philippbayer/the_food_book_sandbox
This is a recipe book used to practice with Git, GitBook and GitHub
philippbayer/wrangling-pangenomes
Data Wrangling and Processing for pangenomics