philipwfowler

amygda

Automated Mycobacterial Growth Detection Algorithm, funded by NIHR Oxford Biomedical Research Centre

predict-pyrazinamide-resistance

pyniverse

generic Python package for parsing, analysing and plotting Zooniverse data classification export files

sbmlcore

Collection of core classes and functions for structure-based machine learning to predict antimicrobial resistance

gnomonicus

Python code to integrate results of tb-pipeline and provide an antibiogram, mutations and variants

gumpy

Genetics with numpy

calculate-bilayer-power-spectrum

pygsi

a Python class to interrogate BIGISI

simple-membrane-protein-analysis

This is a short tutorial showing how to use both VMD and MDAnalysis to analyse a molecular dynamics simulation of a membrane protein.

snpit

Whole-genome SNP based identification of members of the Mycobacterium tuberculosis complex

philipwfowler/simple-membrane-protein-analysis

This is a short tutorial showing how to use both VMD and MDAnalysis to analyse a molecular dynamics simulation of a membrane protein.

philipwfowler/snpit

Whole-genome SNP based identification of members of the Mycobacterium tuberculosis complex

philipwfowler/pygsi

a Python class to interrogate BIGISI

philipwfowler/calculate-bilayer-power-spectrum

philipwfowler/alchembed-tutorial

An ALCHEMBED tutorial

philipwfowler/amr-free-energy-dhfr-examples

philipwfowler/gemucator

Genbank Mutation Locator: give it a mutation and it will tell you the location in the reference genome (and vice versa)

philipwfowler/jitter

Simple python for adding jitter to a list of values to help plotting beeswarm/jitter plots

philipwfowler/2015-01-13-oxford

Software Carpentry Bootcamp at the Wellcome Trust Centre for Human Genetics in Oxford

philipwfowler/2015-10-12-cecam-julich

Software Carpentry workshop at the Forschungzentrum, Jülich, 12-13 October 2015

philipwfowler/bashthebug-outreach-materials

philipwfowler/fd169-image-processing-example

Short python script showing how image processing techniques have been applied to simulations of phase-separating lipids. See the Faraday Discussion paper, http://dx.doi.org/10.1039/c3fd00131h

philipwfowler/gromarks

Simple python package for creating scripts to benchmark GROMACS

philipwfowler/kish

k-mer fishing in a GenBank reference

philipwfowler/mdanalysis

MDAnalysis is a Python library to analyze molecular dynamics trajectories.

philipwfowler/quantitative_biochemistry

philipwfowler/vasta

Simply Python class for creating FASTA files from incremental VCF files

philipwfowler/windows-compile-test