philipwfowler
Computational biophysicist working on antibiotic resistance. Run @fowler-lab and working on @GlobalPathogenAnalysisService .
University of Oxford, Oxford, OX3 9DU, U.K.
Pinned Repositories
amygda
Automated Mycobacterial Growth Detection Algorithm, funded by NIHR Oxford Biomedical Research Centre
predict-pyrazinamide-resistance
pyniverse
generic Python package for parsing, analysing and plotting Zooniverse data classification export files
sbmlcore
Collection of core classes and functions for structure-based machine learning to predict antimicrobial resistance
gnomonicus
Python code to integrate results of tb-pipeline and provide an antibiogram, mutations and variants
gumpy
Genetics with numpy
calculate-bilayer-power-spectrum
pygsi
a Python class to interrogate BIGISI
simple-membrane-protein-analysis
This is a short tutorial showing how to use both VMD and MDAnalysis to analyse a molecular dynamics simulation of a membrane protein.
snpit
Whole-genome SNP based identification of members of the Mycobacterium tuberculosis complex
philipwfowler's Repositories
philipwfowler/simple-membrane-protein-analysis
This is a short tutorial showing how to use both VMD and MDAnalysis to analyse a molecular dynamics simulation of a membrane protein.
philipwfowler/snpit
Whole-genome SNP based identification of members of the Mycobacterium tuberculosis complex
philipwfowler/pygsi
a Python class to interrogate BIGISI
philipwfowler/calculate-bilayer-power-spectrum
philipwfowler/alchembed-tutorial
An ALCHEMBED tutorial
philipwfowler/amr-free-energy-dhfr-examples
philipwfowler/gemucator
Genbank Mutation Locator: give it a mutation and it will tell you the location in the reference genome (and vice versa)
philipwfowler/jitter
Simple python for adding jitter to a list of values to help plotting beeswarm/jitter plots
philipwfowler/mdanalysis
MDAnalysis is a Python library to analyze molecular dynamics trajectories.
philipwfowler/2015-01-13-oxford
Software Carpentry Bootcamp at the Wellcome Trust Centre for Human Genetics in Oxford
philipwfowler/2015-10-12-cecam-julich
Software Carpentry workshop at the Forschungzentrum, Jülich, 12-13 October 2015
philipwfowler/bashthebug-outreach-materials
philipwfowler/fd169-image-processing-example
Short python script showing how image processing techniques have been applied to simulations of phase-separating lipids. See the Faraday Discussion paper, http://dx.doi.org/10.1039/c3fd00131h
philipwfowler/gromarks
Simple python package for creating scripts to benchmark GROMACS
philipwfowler/kish
k-mer fishing in a GenBank reference
philipwfowler/quantitative_biochemistry
philipwfowler/vasta
Simply Python class for creating FASTA files from incremental VCF files
philipwfowler/windows-compile-test