Pinned Repositories
bioconda-recipes
Conda recipes for the bioconda channel.
catfishq
Cat FASTQ files
cwltool
Common Workflow Language reference implementation
fast5_research
Fast5 API provided by ONT Research
fieldbioinformatics
The ARTIC field bioinformatics pipeline
IGV
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
ngmlr
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
pipeline-nanopore-ref-isoforms
Pipeline for annotating genomes using long read transcriptomics data with stringtie and other tools
straglr
philres's Repositories
philres/ngmlr
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
philres/catfishq
Cat FASTQ files
philres/pipeline-nanopore-ref-isoforms
Pipeline for annotating genomes using long read transcriptomics data with stringtie and other tools
philres/straglr
philres/IGV
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
philres/minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
philres/bioconda-recipes
Conda recipes for the bioconda channel.
philres/cwltool
Common Workflow Language reference implementation
philres/fast5_research
Fast5 API provided by ONT Research
philres/fieldbioinformatics
The ARTIC field bioinformatics pipeline
philres/genomeview
philres/marginPhase
philres/medaka
Sequence correction provided by ONT Research
philres/modbam2bed
philres/NucDiff
In-depth characterization and annotation of differences between two sets of DNA sequences
philres/parasail-python
Python bindings for the parasail C library.
philres/seqtk
philres/svviz2
for visual evaluation of read support for structural variation