philres/catfishq

Issues

• Default start-time behaviour

  #13 opened 2 years ago by rfetherston
  1

• Timestamp parsing error

  #17 opened 2 years ago by rfetherston
  1

• Look at alternatives for handling versioning and dependencies

  #22 opened 3 years ago by philres
  0

• Test pyfastx for FASTQ parsing

  #21 opened 3 years ago by philres
  0

• Look into alternatives for argparse

  #20 opened 3 years ago by philres
  0

• Use numpy to compute q-scores more efficiently

  #19 opened 3 years ago by philres
  0

• Add deduplication by read id

  #1 opened 3 years ago by philres
  1

• TypeError: Argument must be string or unicode

  #16 opened 3 years ago by humbleflowers
  2

• LICENSE file not distributed via PyPI

  #10 opened 3 years ago by smoe
  0

• Error when parsing fastq files with empty sequences

  #7 opened 4 years ago by biorococo
  0

• Reimplement i golang

  #6 opened 4 years ago by philres
  0

• Add parameter to specify extensions to look for

  #5 opened 4 years ago by philres
  0

• Implement q-score computation in C

  #4 opened 4 years ago by philres
  0

• Reformat ONT header info into SAM/BAM tags

  #3 opened 4 years ago by philres
  0

• Test pyfastx

  #2 opened 4 years ago by philres
  0