philtat

philtat's Stars

• vinay-swamy/RBedtools

  R wrapper for Bedtools

  Language:R51

• AmpliconSuite/AmpliconClassifier

  Classify output of AmpliconArchitect to detect types of focal amplifications present

  Language:Python1411

• AmpliconSuite/AmpliconSuite-pipeline

  A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior to running AmpliconArchitect. Previously called PrepareAA.

  Language:Python5628

• virajbdeshpande/AmpliconArchitect

  AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and elucidates the architecture of the amplicon. In the current version, AA takes as input next generation sequencing reads (paired-end Illumina reads) mapped to the hg19/GRCh37 reference sequence and one or more regions of interest. Please "watch" this repository for improvements in runtime, accuracy and annotations for GRCh38 human reference genome coming up soon.

  Language:Python13443

• pk7zuva/Circle_finder

  Micro DNA identification

  Language:Shell2213