virajbdeshpande/AmpliconArchitect
AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and elucidates the architecture of the amplicon. In the current version, AA takes as input next generation sequencing reads (paired-end Illumina reads) mapped to the hg19/GRCh37 reference sequence and one or more regions of interest. Please "watch" this repository for improvements in runtime, accuracy and annotations for GRCh38 human reference genome coming up soon.
PythonNOASSERTION
Stargazers
- arontommi
- auberginekenobi
- biomystery
- cangfengzheGrandomics Biosciences
- chaotianle
- ctsaPacific Biosciences
- daizaoNantong University
- dengyq365Sichuan University
- Derricca
- evanbiederstedt
- HCT116
- ipstoneUSA
- isidrocEMBL-EBI
- ivazquezMemorial Sloan Kettering/Columbia University
- jluebeckUC San Diego
- kepbodTongji University
- leezxDFCI, HMS, Broad Institute
- likeletSun Yat-sen University Cancer center
- MagpiePKUBeijing, China
- Miachol@openbiox
- NanguageWuhan
- patchper
- powerinformatics
- Shukyo
- sirusbSidra Medicine
- softbear
- sunhaifeng123
- torinkwokHangchow, China (PR)
- vallurumkUniversity of Sheffield
- virajbdeshpandeUniversity of California San Diego
- wangjuan001
- wisekh6
- XiaoTaoWangFudan University
- YingYa
- yjx1217Sun Yat-sen University Cancer Center (SYSUCC)
- ZunpengLiu