phraber

phraber's Stars

• ChrisJohnsen/tmux-MacOSX-pasteboard

  Notes and workarounds for accessing the Mac OS X pasteboard in tmux sessions. Note: The pu branch (“Proposed Updates”) may be rewound without notice.

  Language:C2.4k84

• ipython/ipyparallel

  IPython Parallel: Interactive Parallel Computing in Python

  Language:Jupyter Notebook2.6k1k

• Trusted-AI/AIX360

  Interpretability and explainability of data and machine learning models

  Language:Python1.6k308

• phraber/lassie

  Select sites and sequences from a serially sampled alignment

  Language:Python13

• octocat/Hello-World

  My first repository on GitHub!

  2.7k2.4k

• gecrooks/weblogo

  WebLogo 3: Sequence Logos redrawn

  Language:Python14439

• networkx/networkx

  Network Analysis in Python

  Language:Python14.8k3.2k

• joyofdata/joyofdata-articles

  code and sessions for articles on joyofdata.de

  Language:R5645

• hadley/adv-r

  Advanced R: a book

  Language:TeX2.4k1.7k

• RGLab/HIV.db

  HIV annotation database

  Language:R31

• RGLab/pepStat

  Peptide microarray statistical analysis

  Language:R73

• marbl/gingr

  Language:C++135

• marbl/parsnp

  Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.

  Language:C++12825