Creating .h5 output file

[e-arslan]

Hi thanks for the method.

I'm having an issue while running Aggregating network part

make -f makefiles/static.mk combine

mkdir -p output/
OPENBLAS_NUM_THREADS=1 NUMEXPR_NUM_THREADS=1 MKL_NUM_THREADS=1 OPENBLAS_MAX_THREADS=1 NUMEXPR_MAX_THREADS=1 MKL_MAX_THREADS=1 python3 -m dictys network tofile data tmp_static data/subsets.txt output/static.h5
WARNING:27658:2024-01-07 18:59:19,742:/Users/earslan/opt/anaconda3/envs/dictys/lib/python3.9/site-packages/dictys/net/init.py:403:Skipping cell subset pt_28_c1d1 due to error: FileNotFoundError(2, 'No such file or directory')
WARNING:27658:2024-01-07 18:59:19,743:/Users/earslan/opt/anaconda3/envs/dictys/lib/python3.9/site-packages/dictys/net/init.py:403:Skipping cell subset pt_28_c1d1 due to error: FileNotFoundError(2, 'No such file or directory')
WARNING:27658:2024-01-07 18:59:19,743:/Users/earslan/opt/anaconda3/envs/dictys/lib/python3.9/site-packages/dictys/net/init.py:403:Skipping cell subset pt_28_c1d3 due to error: FileNotFoundError(2, 'No such file or directory')
WARNING:27658:2024-01-07 18:59:19,744:/Users/earslan/opt/anaconda3/envs/dictys/lib/python3.9/site-packages/dictys/net/init.py:403:Skipping cell subset pt_28_c1d3 due to error: FileNotFoundError(2, 'No such file or directory')
WARNING:27658:2024-01-07 18:59:19,744:/Users/earslan/opt/anaconda3/envs/dictys/lib/python3.9/site-packages/dictys/net/init.py:403:Skipping cell subset pt_28_c1d8 due to error: FileNotFoundError(2, 'No such file or directory')
WARNING:27658:2024-01-07 18:59:19,744:/Users/earslan/opt/anaconda3/envs/dictys/lib/python3.9/site-packages/dictys/net/init.py:403:Skipping cell subset pt_28_c1d8 due to error: FileNotFoundError(2, 'No such file or directory')
WARNING:27658:2024-01-07 18:59:19,745:/Users/earslan/opt/anaconda3/envs/dictys/lib/python3.9/site-packages/dictys/net/init.py:403:Skipping cell subset pt_28_c2d1 due to error: FileNotFoundError(2, 'No such file or directory')
WARNING:27658:2024-01-07 18:59:19,745:/Users/earslan/opt/anaconda3/envs/dictys/lib/python3.9/site-packages/dictys/net/init.py:403:Skipping cell subset pt_28_c2d1 due to error: FileNotFoundError(2, 'No such file or directory')
Traceback (most recent call last):
File "/Users/earslan/opt/anaconda3/envs/dictys/lib/python3.9/runpy.py", line 197, in _run_module_as_main
return _run_code(code, main_globals, None,
File "/Users/earslan/opt/anaconda3/envs/dictys/lib/python3.9/runpy.py", line 87, in _run_code
exec(code, run_globals)
File "/Users/earslan/opt/anaconda3/envs/dictys/lib/python3.9/site-packages/dictys/main.py", line 13, in
docstringrunner(package)
File "/Users/earslan/opt/anaconda3/envs/dictys/lib/python3.9/site-packages/docstring2argparse/init.py", line 340, in docstringrunner
run_args(pkgname,funcs,args)
File "/Users/earslan/opt/anaconda3/envs/dictys/lib/python3.9/site-packages/docstring2argparse/init.py", line 330, in run_args
return func(*a,**ka)
File "/Users/earslan/opt/anaconda3/envs/dictys/lib/python3.9/site-packages/dictys/network.py", line 1074, in tofile
n=network.from_folders(diri_data,diri_work,fi_subsets,dynamic=dynamic,nettype=nettype,optional=optional,fi_c=fi_c)
File "/Users/earslan/opt/anaconda3/envs/dictys/lib/python3.9/site-packages/dictys/net/init.py", line 407, in from_folders
raise RuntimeError('No network found.')
RuntimeError: No network found.
make: *** [makefiles/common.mk:178: output/static.h5] Error 1

[lingfeiwang]

Hi, thanks for the interest. Did you run the tutorial successfully?