pinin4fjords
Bioinformatics Engineer at Seqera, formerly at the EBI and in academic bioinformatics support. Keen on workflows and large-scale reproducible analysis.
SeqeraGlasgow, UK
Pinned Repositories
illumina_array_pipeline
A basic make-based pipeline for Illumina array data, from raw to interactive visualisations
nft-utils
nf-test utility functions
shinyngs
Shiny apps for NGS etc based on reusable components created using Shiny modules
training
Nextflow training material
upset-shiny-plotly
UpSet plots from a Shiny app, rendered with Plotly
pinin4fjords's Repositories
pinin4fjords/scanpy-scripts
Scripts for using scanpy
pinin4fjords/harmonypy
🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.
pinin4fjords/validator
pinin4fjords/templates
Document templates for open-source projects (README, CONTRIBUTING, GitHub templates)
pinin4fjords/multi-package-containers
Testing building mulled containers for multi-requirement tools.
pinin4fjords/singleCellNet
SingleCellNet: classify single cells across species and platforms
pinin4fjords/irap
integrated RNA-seq Analysis Pipeline
pinin4fjords/template
A template Sphinx repo
pinin4fjords/zhangneurons
pinin4fjords/upset-shiny-plotly
UpSet plots from a Shiny app, rendered with Plotly
pinin4fjords/illumina_array_pipeline
A basic make-based pipeline for Illumina array data, from raw to interactive visualisations
pinin4fjords/axtontalens
Simple TALEN assembly R script and associated files