Global Change Research Group
Advancing global understanding of populations and communities in a rapidly changing environment
New Brunswick, NJ
Pinned Repositories
codEvol
Scripts for analysis of Atlantic cod genome sequences through time (Northeast Arctic and Canada)
ecoevo_coral
Eco-evo models for coral adaptation to climate change
genomics
Wrangling of genomic data and identity analysis
how_we_work
Group resources and operating procedures
laboratory
wet lab protocols including sequencing library preparation
OceanAdapt
Scripts and data for OceanAdapt website to visualize shifts in marine animal distributions
pinskylab_methods
Methods used by many of us in the lab
project_velocity
Project climate velocity for marine animals in North America out to 2100
RepoNavigation
This directory is intended to act as a central navigation hub of the Pinsky lab GitHub
SRA-submission
Michelle's repo to keep track of how to submit to the sequencing read archive aka short read archive
Global Change Research Group's Repositories
pinskylab/how_we_work
Group resources and operating procedures
pinskylab/OceanAdapt
Scripts and data for OceanAdapt website to visualize shifts in marine animal distributions
pinskylab/pinskylab_methods
Methods used by many of us in the lab
pinskylab/genomics
Wrangling of genomic data and identity analysis
pinskylab/dynamic_range_model
dynamic range models and forecast methods
pinskylab/laboratory
wet lab protocols including sequencing library preparation
pinskylab/project_velocity
Project climate velocity for marine animals in North America out to 2100
pinskylab/SRA-submission
Michelle's repo to keep track of how to submit to the sequencing read archive aka short read archive
pinskylab/climate_community_crossrealm
Comparisons of community responses to temperature change across realms
pinskylab/field
Scripts used in the field for the Clownfish project to import and double check data
pinskylab/Fish_regression_ABC
Regression approximate bayesian computation (RABC) algorithm for parameter estimation and inference in a size-structured population model.
pinskylab/globalFishGenetics
Global marine patterns of fish genetic diversity
pinskylab/Phils_GIS_R
Clownfish map making, from scripts to QGIS files
pinskylab/A_clarkii_transcriptomics
scripts, data, and plots for Amphiprion clarkii transcriptomics project
pinskylab/adultPADE
Code for population structure and locus-environmental associations for adult summer flounder
pinskylab/arg_coral_reefs
Code to accompany Pinsky et al. 2023 Coral Reef Population Genomics in an Age of Global Change. Annual Review of Genetics
pinskylab/Atlantic_croaker_range
Data and code for the genomic analysis of Atlantic croaker (Micropogonias undulatus) and incorporation of genomic data into range projections of the species.
pinskylab/bsb-shift-drivers
pinskylab/CamotesROMS
Project comparing observed larval dispersal against oceanographic mmodels for the Camotes Sea, Philippines.
pinskylab/Clownfish_persistence
Allison's clownfish metapopulation persistence analysis
pinskylab/ClownfishGWAS
Katrina Catalano's data and code for project investigating associations between larval traits and genotypes from Expressed Exome Capture Sequencing in Amphiprion percula.
pinskylab/DispersalVariation
pinskylab/ebs_dissimilarity_time_sensitivity
Exploration of the effects of spatial and temporal scale on biotic homogenization using the Eastern Bering Sea as a test case. Zoë Kitchel dissertation chapter.
pinskylab/kelpEVOL_fq_gz_processing
Pre-Processing PIRE Data
pinskylab/lab-manual
Fay Lab Manual / how we work
pinskylab/life_history_genetic_diversity
pinskylab/logger_remote_temps
Comparison of in situ temperature logger data to remote sensed temperatures on coral reefs, author Jaelyn Bos
pinskylab/metaKelp
pinskylab/mtDNA_Comparative
pinskylab/RyanBatt_Trawl