Pinned Repositories
chss19
Code for Clare Hall Summer Soiree 2019 website.
sc3s
Single Cell Consensus Clustering with Speed
ads1-notebooks
Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing
ads1-slides
Slides for Algorithms for DNA Sequencing Coursera class
biospark
Cambridge Gravity BioSpark Challenge 2022/23 - CRISPR database visualisation platform
password_generator
Python script to generate random passwords.
R_bookclub18
Notes and code from the Sainsbury Laboratory Cambridge University book club.
scrapbook
Code snippets, useful one-liners and related trivia.
WormStraightener
ImageJ macro to straighten a directory of images.
pittachalk's Repositories
pittachalk/scrapbook
Code snippets, useful one-liners and related trivia.
pittachalk/ads1-notebooks
Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing
pittachalk/biospark
Cambridge Gravity BioSpark Challenge 2022/23 - CRISPR database visualisation platform
pittachalk/password_generator
Python script to generate random passwords.
pittachalk/R_bookclub18
Notes and code from the Sainsbury Laboratory Cambridge University book club.
pittachalk/WormStraightener
ImageJ macro to straighten a directory of images.
pittachalk/bad-boids
A deliberately badly programmed implementation of Boids for teaching
pittachalk/chipseq-smk
A custom Snakemake pipeline for ChIP-seq analysis in bioinformatics.
pittachalk/easy-markdown-beamer-pandoc
Simple things nobody tells you how to do
pittachalk/ebi02156
pittachalk/Farmpy
Python3 package to handle job submission to a compute farm
pittachalk/github_example
working repository for rse course
pittachalk/intro-machine-learning
pittachalk/intro-stan-python
Notebooks with introductory material on using Stan, from Python
pittachalk/ISL-python
Porting the R code in ISL to python. Labs and exercises
pittachalk/ISLR-python
An Introduction to Statistical Learning (James, Witten, Hastie, Tibshirani, 2013): Python code
pittachalk/manim
Animation engine for explanatory math videos
pittachalk/odgi
Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs
pittachalk/phd-thesis-template
My customised version of the popular LaTeX / XeLaTeX / LuaLaTeX PhD thesis template for Cambridge University Engineering Department (CUED)
pittachalk/poole
The Jekyll Butler. A no frills responsive Jekyll blog theme.
pittachalk/remark
A simple, in-browser, markdown-driven slideshow tool.
pittachalk/reveal.js
The HTML Presentation Framework
pittachalk/rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
pittachalk/rsd-engineeringcourse
Materials for Turing's Research Software Engineering course
pittachalk/sc_mixology
This contains the dataset for comparing scRNA-seq analysis methods
pittachalk/single-cell-rna-seq
A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.
pittachalk/slurm
Cookiecutter for snakemake slurm profile
pittachalk/snakemake-slurm-profile
Profile for running snakemake with slurm job submissions
pittachalk/styles
Official repository for Citation Style Language (CSL) citation styles.
pittachalk/weighted_k_means
A weighted k-means implementation.