pittachalk

pittachalk's Stars

• NorthboundTrain/jqg

  search JSON using JQ, printing full path/flattened results

  Language:Shell221

• github/gitignore

  A collection of useful .gitignore templates

  163k83.1k

• rohitdhas/shittier

  Shittier is an unconventional code formatting tool

  Language:TypeScript1.7k28

• nicolargo/glances

  Glances an Eye on your system. A top/htop alternative for GNU/Linux, BSD, Mac OS and Windows operating systems.

  Language:Python27.2k1.5k

• piosierra/pantera

  Identification of transposable element families from pangenome polymorphisms

  Language:Slash431

• brewsci/homebrew-bio

  :beer::microscope: Bioinformatics formulae for the Homebrew package manager (macOS and Linux)

  Language:Ruby306120

• jupyter/nbdime

  Tools for diffing and merging of Jupyter notebooks.

  Language:TypeScript2.7k160

• lux-org/lux

  Automatically visualize your pandas dataframe via a single print! 📊 💡

  Language:Python5.2k369

• Snakemake-Profiles/slurm

  Cookiecutter for snakemake slurm profile

  Language:Python12644

• marbl/Mash

  Fast genome and metagenome distance estimation using MinHash

  Language:C++39690

• snakemake-workflows/snakemake-workflow-template

  A template for standard compliant snakemake-workflows

  Language:Python9033

• pangenome/pggb

  the pangenome graph builder

  Language:Shell40444

• MonitorControl/MonitorControl

  🖥 Control your display's brightness & volume on your Mac as if it was a native Apple Display. Use Apple Keyboard keys or custom shortcuts. Shows the native macOS OSDs.

  Language:Swift28.5k825

• alan-turing-institute/rse-course

  Materials for The Alan Turing Institute's Research Software Engineering course

  Language:Jupyter Notebook237116

• ericlbarrett/XOutput

  A small DirectInput to Xinput wrapper

  Language:C#16143

• billzt/gff3sort

  GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools

  Language:Perl4719

• LuyiTian/sc_mixology

  This contains the dataset for comparing scRNA-seq analysis methods

  Language:HTML9024

• gedcom/scCCESS

  Single-cell Consensus Clusters of Encoded Subspaces

  Language:R68

• rrwick/Perfect-bacterial-genome-tutorial

  Language:Python12620

• semraulab/phiclust

  A clusterability measure for scRNA-seq data.

  Language:R172

• bioinformatics-core-shared-training/SingleCell_RNASeq_Sept22

  Language:CSS32

• bioinformatics-training/intro-machine-learning-2019

  Course materials for An Introduction to Machine Learning 2019

  Language:HTML1512

• jtnystrom/Discount

  Very large scale k-mer counting and analysis on Apache Spark.

  Language:Scala182

• asl/BandageNG

  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

  Language:C++11610

• AylaScientist/Snakemake_for_SNPs

  Obtain unbiased SNPs after FASTQ files bacoded for UMI

  Language:Perl3

• posit-dev/py-shiny

  Shiny for Python

  Language:Python1.3k83

• AnimalGenomicsETH/bovine-graphs

  Integrate multiple genome assemblies into a pangenome graph

  Language:Python326

• glarue/reciprologs

  Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.

  Language:Python115

• lh3/minigraph

  Sequence-to-graph mapper and graph generator

  Language:C42338

• adamjamesreid/gurdon-bioinformatics

  2