piyumalanthony

ACTIVESEGMENTATION

Active Segmentation Project

Advanced-Algorithms

AlgoAssignement-1

ARapp

Capsules-for-text

Capsule networks for text based analytics and classifications.

Context_sensitive_caps

DemotteScience

GANs

Notes for Generative Adversarial Networks

phylo-gnn

GNN based approach to generate embeddings for phylogenetic trees.

PhyloFlow

Normalizng flows for Phylogenomics.

piyumalanthony/GANs

Notes for Generative Adversarial Networks

piyumalanthony/PhyloFlow

Normalizng flows for Phylogenomics.

piyumalanthony/academicpages.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

piyumalanthony/ai-by-hand-excel

piyumalanthony/ARTree

The official codebase for ARTree (NeurIPS 2023)

piyumalanthony/beast2

Bayesian Evolutionary Analysis by Sampling Trees

piyumalanthony/BenchmarkAlignments

Benchmark empirical datasets for phylogenetic method development

piyumalanthony/chronumental

Estimating time trees from very large phylogenies

piyumalanthony/DNABERT_S_original

DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models

piyumalanthony/EBG

Tool for estimating the Felsenstein bootstrap support of phylogenetic trees

piyumalanthony/EBG_train

Training pipeline and data for EBG

piyumalanthony/EvoNAPS

EvoNAPS is a database providing input parameter settings for extensive sequence simulations to be used in phylogenetic studies.

piyumalanthony/intro-to-gadi

piyumalanthony/Manuscript_Code

Repository for code used for publications

piyumalanthony/mcmc-date

Estimate node ages of a phylogeny by approximating the phylogenetic likelihood with a multivariate normal distribution.

piyumalanthony/MetaCoAG

🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs

piyumalanthony/Mice-testing

piyumalanthony/minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

piyumalanthony/open-webui

User-friendly WebUI for LLMs (Formerly Ollama WebUI)

piyumalanthony/paml

PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **technical issues** on this repository (e.g., compiling, programs abort, etc.). Problems with input data (e.g., error/warning messages) & general questions should be posted at https://groups.google.com/g/pamlsoftware?pli

piyumalanthony/Papers-in-100-Lines-of-Code

Implementation of papers in 100 lines of code.

piyumalanthony/PhylogenomicsPipelines

Two pipelines to perform phylogenomic analysis

piyumalanthony/piyumalanthony

Config files for my GitHub profile.

piyumalanthony/piyumalanthony.github.io

piyumalanthony/sbn

Generalizing Phylogenetic Posterior Estimator from MCMC samples via subplit Bayesian networks

piyumalanthony/simde

Implementations of SIMD instruction sets for systems which don't natively support them.

piyumalanthony/The-C-20-Masterclass-Source-Code

Source code for the C++ 20 Masterclass on udemy

piyumalanthony/TreeMatching2

Tree comparison between IQ-TREE and BaseML

piyumalanthony/UnitigBIN

[ICLR'24] Encoding Unitig-level Assembly Graphs with Heterophilous Constraints for Metagenomic Contigs Binning

piyumalanthony/XHap

Using transformers for haplotype assembly