piyumalanthony

ACTIVESEGMENTATION

Active Segmentation Project

Advanced-Algorithms

AlgoAssignement-1

ARapp

Capsules-for-text

Capsule networks for text based analytics and classifications.

Context_sensitive_caps

DemotteScience

GANs

Notes for Generative Adversarial Networks

phylo-gnn

GNN based approach to generate embeddings for phylogenetic trees.

PhyloFlow

Normalizng flows for Phylogenomics.

piyumalanthony/travelagent

piyumalanthony/phylo-gnn

GNN based approach to generate embeddings for phylogenetic trees.

piyumalanthony/sinhala-lyrics-elastic

piyumalanthony/ASTRAL

Accurate Species TRee ALgorithm

piyumalanthony/CAECseq

A Convolutional Auto-Encoder for Haplotype Assembly and Viral Quasispecies Reconstruction

piyumalanthony/esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

piyumalanthony/GWAS_NN

Code for "Gene-Gene Interaction Detection with Deep Learning"

piyumalanthony/Hands-On-Graph-Neural-Networks-Using-Python

Hands-On Graph Neural Networks Using Python, published by Packt

piyumalanthony/mammals_dating

Methods for the analyses described in Álvarez-Carretero, et al. 2022 (https://doi.org/10.1038/s41586-021-04341-1)

piyumalanthony/MinVar-Rooting

Linear-time rooting of phylogenetic trees

piyumalanthony/ModelRevelator

piyumalanthony/msa-transformer

MSA Transformer reproduction code

piyumalanthony/NeurHap

[NeurIPS'22] Graph Coloring via Neural Networks for Haplotype Phasing of Polyploid Species and Viral Quasispecies

piyumalanthony/NeuroSEED

Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)

piyumalanthony/nways_accelerated_programming

piyumalanthony/phables

🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes

piyumalanthony/phylotorch

A framework for effeceint phylogenetic inference using pytorch

piyumalanthony/progen

Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax

piyumalanthony/radian

Nanopore direct RNA basecaller

piyumalanthony/RepBin

[AAAI'22] RepBin: Constraint-Based Graph Representation Learning for Metagenomic Binning

piyumalanthony/Roberta-Sinhala

piyumalanthony/sample.github.io

Github pages

piyumalanthony/sanbomics_scripts

scripts and notebooks from sanbomics

piyumalanthony/snp2vec

Code and dataset for SNP2Vec paper

piyumalanthony/TextAttack

TextAttack 🐙 is a Python framework for adversarial attacks, data augmentation, and model training in NLP https://textattack.readthedocs.io/en/latest/

piyumalanthony/tree_branch

piyumalanthony/treeflow

piyumalanthony/TreeMatching

Comparing two trees which have diffeents roots.

piyumalanthony/vbpi-gnn

Code for learnable topological features for phylogenetic inference via graph neural networks

piyumalanthony/vbpi-torch

Pytorch Implementation of Variational Bayesian Phylogenetic Inference