Pinned Repositories
Amplicon_analysis-galaxy
Galaxy tools for Mauro Tutino's microbiome pipeline scripts https://github.com/MTutino/Amplicon_analysis
ansible-palfinder-galaxy
Ansible playbooks for deploying BCF-managed Galaxy instances on UoM VMs
bioinf-software-install
Scripts to help with building and deploying bioinformatics software
fedora-rpms-bioinf
Spec files and resources for building Fedora RPMS
fusebox
Implements read-only virtual filesystem with finer grained user access
galaxy-admin-utils
Utility scripts for working with local instances of Penn State's Galaxy platform http://wiki.galaxyproject.org/
mock-utils
Utility scripts for building RPMs using mock
nebulizer
Command line utilities to help manage users, tools and data libraries in a Galaxy instance via the API
stoker
Utility to help examine and archive NGS data from SOLiD and Illumina sequencing platforms
pjbriggs's Repositories
pjbriggs/nebulizer
Command line utilities to help manage users, tools and data libraries in a Galaxy instance via the API
pjbriggs/fedora-rpms-bioinf
Spec files and resources for building Fedora RPMS
pjbriggs/galaxy-admin-utils
Utility scripts for working with local instances of Penn State's Galaxy platform http://wiki.galaxyproject.org/
pjbriggs/fusebox
Implements read-only virtual filesystem with finer grained user access
pjbriggs/ansible-palfinder-galaxy
Ansible playbooks for deploying BCF-managed Galaxy instances on UoM VMs
pjbriggs/Amplicon_analysis-galaxy
Galaxy tools for Mauro Tutino's microbiome pipeline scripts https://github.com/MTutino/Amplicon_analysis
pjbriggs/bioinf-software-install
Scripts to help with building and deploying bioinformatics software
pjbriggs/fedora-rpms-verdurin
RPM Packaging work for Fedora
pjbriggs/scripting-and-programming
Notes and recipes for scripting and programming
pjbriggs/stoker
Utility to help examine and archive NGS data from SOLiD and Illumina sequencing platforms
pjbriggs/AAFC-Galaxy
Galaxy tool wrappers, tool dependencies, and workflows.
pjbriggs/Amplicon_analysis
pjbriggs/arqvist
Utility to explore and curate NGS data
pjbriggs/auto_process-extras
Experimental utility scripts to supplement auto_process_ngs
pjbriggs/bgruening-galaxytools
Galaxy Tool wrappers
pjbriggs/bioconda-recipes
Conda recipes for the bioconda channel.
pjbriggs/cargo-port
cache packages permanently
pjbriggs/CRAFT-GP
pjbriggs/CRAFT-GP-galaxy
Galaxy tools to wrap the CRAFT-GP pipeline
pjbriggs/dapars
DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)
pjbriggs/download_archive
Storage of 3rd-party tarballs etc
pjbriggs/galaxy
Data intensive biology for everyone.
pjbriggs/galaxy-hub
Galaxy project website, aka Galaxy Community Hub
pjbriggs/genomics-update-qc-reports
Making improvements to the reports from the QC pipeline in the genomics repository
pjbriggs/gh-sandbox
Sandbox for experimenting with GitHub Actions etc
pjbriggs/lparsons-galaxy_tools
Wrappers for galaxy tools
pjbriggs/pal_filter
Program to pick optimum loci from the output of pal_finder_v0.02.04 This program can be used to filter output from pal_finder and choose the 'optimum' loci. For the paper referencing this workflow, see Griffiths et al. (unpublished as of 15/02/2016) (sarah.griffiths-5@postgrad.manchester.ac.uk)
pjbriggs/snp2hla-p
pjbriggs/tools-devteam
Contains a set of Galaxy Tools mostly written by the Galaxy Team.
pjbriggs/tools-iuc
Tool Shed repositories maintained and developed by the Intergalactic Utilities Commission