Pinned Repositories
AGG-priority-traits
Data from the AGG's November 2023 Community of Practice meeting
brioche
Brioche is a bioinformatics pipeline for mapping markers to a given reference genome. brioche uses Nextflow, a domain-specific language (DSL) for defining workflows, as its workflow management tool. Brioche streamlines marker mapping to reference genomes through a Nextflow-powered pipeline.
child-process-progressive
Wrap node child_process, implementing a progressive option for multiple data chunks sent via SSE.
germinate-brapi
BrAPI implementation for Germinate
germinate-server
The generic plant genetic resources database
lamington
Core Diversity Set Explorer
pretzel
Javascript full-stack framework for Big Data visualisation and analysis
pretzel-application-note
A repository for an application note about pretzel
pretzel-input-generator
pretzel-static-pages
Static HTML Content for the landing page of the Pretzel project instance
Plant Informatics (Agriculture Victoria)'s Repositories
plantinformatics/pretzel
Javascript full-stack framework for Big Data visualisation and analysis
plantinformatics/AGG-priority-traits
Data from the AGG's November 2023 Community of Practice meeting
plantinformatics/AVRIG-wheatbarley-40k
Datasets related to the Infinium Wheat Barley 40K SNP chip co-developed by Agriculture Victoria and InterGrain
plantinformatics/brioche
Brioche is a bioinformatics pipeline for mapping markers to a given reference genome. brioche uses Nextflow, a domain-specific language (DSL) for defining workflows, as its workflow management tool. Brioche streamlines marker mapping to reference genomes through a Nextflow-powered pipeline.
plantinformatics/child-process-progressive
Wrap node child_process, implementing a progressive option for multiple data chunks sent via SSE.
plantinformatics/germinate-brapi
BrAPI implementation for Germinate
plantinformatics/germinate-server
The generic plant genetic resources database
plantinformatics/lamington
Core Diversity Set Explorer
plantinformatics/pretzel-application-note
A repository for an application note about pretzel
plantinformatics/pretzel-data
Data structure for https://github.com/plantinformatics/pretzel
plantinformatics/pretzel-documentation-website
plantinformatics/pretzel-input-generator
plantinformatics/pretzel-static-pages
Static HTML Content for the landing page of the Pretzel project instance
plantinformatics/pretzel-user-guide
User guide for Pretzel
plantinformatics/pretzel-user-guide-old
Pretzel User Guide
plantinformatics/pretzel-wheat-agronomic-genes
Curated list of agronomic genes of interest in wheat
plantinformatics/Durum_iSelect_90kSNP_GenotypeCalling
Perl script for generating genotype calls for unrelated durum wheat samples assayed using the Illumina iSelect 90K SNP bead chip array
plantinformatics/ember-cli-multi-store-service
plantinformatics/ember-jsoneditor
Ember component to view, edit and format JSON.
plantinformatics/ember-raf-scheduler
Simple generic scheduler that wraps the Ember runloop and requestAnimationFrame
plantinformatics/ember-split-view-modifier
ember {{split-view}} element modifier
plantinformatics/genolink
Genolink is a middleware for integrating genotype databases and Genesys, reducing data redundancy, and enabling real-time data access and filtering across genomic platforms.
plantinformatics/interval-bins
binEvenLengthRound() : Calculate the bin size for even-sized bins to span the given interval. binBoundaries() : Generate an array of even-sized bins to span the given interval.
plantinformatics/shortbread2
Shortbread2 is a bioinformatics pipeline for identifying single nucleotide polymorphisms (SNPs) and insertions/deletions (indels) from High-Throughput Next Generation Sequencing (NGS) data.
plantinformatics/vcf-genotype-brapi
Client and server functions to access genotype data from VCF via a custom web API and BrAPI