plantinformatics/pretzel

Issues

• Standardisation of Pretzel Deployment

  #377 opened 2 months ago by kennyAgricultureVic
  5

• Working Group Use Case #3 Extensions

  #394 opened 6 months ago by Don-Isdale
  6

• Streamlining setup of blast databases

  #411 opened 3 months ago by Don-Isdale
  0

• VCF Download : column changes for standard format

  #410 opened 3 months ago by Don-Isdale
  0

• BrAPI Wittenberg Hackathon 2024 notes

  #372 opened 8 months ago by gabrielkg
  7

• DNA Sequence Search (Blast) getting errors and returning an empty result to the GUI

  #401 opened 6 months ago by Don-Isdale
  2

• Include blastServer in docker-compose yaml to enable single-command installation and startup

  #399 opened 4 months ago by Don-Isdale
  10

• Genotype request : filter out duplicate sample names entered by the user

  #409 opened 4 months ago by Don-Isdale
  0

• SVG changes to make publication easier

  #353 opened 2 years ago by Don-Isdale
  0

• Upgrade frontend frameworks and libraries

  #370 opened 4 months ago by Don-Isdale
  10

• Blast returns "The search completed and returned 0 hits" when it fails to run

  #398 opened 5 months ago by kennyAgricultureVic
  3

• Reliability testing

  #396 opened 6 months ago by Don-Isdale
  1

• Enable Germinate Datasource, without requiring url option

  #375 opened 6 months ago by Don-Isdale
  2

• Pretzel server exits after Cannot set headers after they are sent to the client

  #408 opened 4 months ago by Don-Isdale
  1

• Backup dev pretzel database

  #402 opened 5 months ago by Don-Isdale
  1

• Disable in GUI features which are not configured or operational in the server

  #406 opened 5 months ago by Don-Isdale
  0

• Public data visible to a session without a login

  #407 opened 5 months ago by Don-Isdale
  0

• Multi-server : could see public datasets but not groups, even own

  #405 opened 5 months ago by Don-Isdale
  0

• Discussion of future options for natural language search - current tools for LLM / Graph / LangChain

  #403 opened 6 months ago by Don-Isdale
  0

• Feature / marker names which are numbers are being converted to numeric type instead of string

  #404 opened 5 months ago by Don-Isdale
  0

• Possible extensions to VCF Genotype Search - Working Group # 3

  #395 opened 6 months ago by Don-Isdale
  0

• vcfGenotypeLookup() : add to params : SNP names array

  #387 opened 6 months ago by Don-Isdale
  1

• Extending data/ API for VCF Genotype Search

  #384 opened 6 months ago by Don-Isdale
  1

• Set up #370 feature/upgradeFrontend2 on test server

  #381 opened 6 months ago by Don-Isdale
  1

• Change default position of right/bottom panel to right

  #374 opened 6 months ago by Don-Isdale
  1

• Customise single-command installation for a MS Windows PC

  #400 opened 6 months ago by Don-Isdale
  0

• Add capability for pretzel to run in multiple parallel URL subdirectories

  #380 opened 6 months ago by Don-Isdale
  0

• Layout and finalisation of Genotype Search

  #392 opened 6 months ago by Don-Isdale
  5

• Change white-space filtering in text input fields for DNA Sequence search and Feature Search

  #397 opened 6 months ago by Don-Isdale
  0

• Working Group Use Case 3 : Request Genotype values for given Dataset, SNP Names, Samples

  #383 opened 6 months ago by Don-Isdale
  3

• Navigation for VCF Genotype Search tab

  #385 opened 6 months ago by Don-Isdale
  1

• VCF Genotype Search : Results Display

  #388 opened 6 months ago by Don-Isdale
  1

• Use case dialog component : VCF Genotype Search

  #386 opened 6 months ago by Don-Isdale
  1

• Search all .vcf.gz files of the selected dataset

  #391 opened 6 months ago by Don-Isdale
  1

• Extend VCF Lookup with the addition of parameter : SNP names array

  #389 opened 6 months ago by Don-Isdale
  1

• Monitor connectivity of blast search flask server

  #393 opened 6 months ago by Don-Isdale
  0

• Change display of token in Datasources panel to a Copy button

  #390 opened 7 months ago by Don-Isdale
  0

• Display and selection of haplotypes

  #359 opened 7 months ago by Don-Isdale
  2

• Run blast micro-service on test server to enable blast within container

  #378 opened 7 months ago by kennyAgricultureVic
  0

• Pretzel access to Germinate API : completion of AOP items

  #360 opened 7 months ago by Don-Isdale
  1

• Add support for BrAPI to server side in Pretzel : /allelematrix

  #382 opened 7 months ago by Don-Isdale
  0

• [BUG] Histogram display not able to handle smaller datasets

  #373 opened 7 months ago by Don-Isdale
  2

• VCF Dataset directory misnaming causes server to exit

  #379 opened 7 months ago by Don-Isdale
  0

• Non-confirmed email

  #367 opened a year ago by Troelsmou
  2

• Stabilising existing features

  #365 opened a year ago by Don-Isdale
  0

• Germinate connection step by step

  #364 opened a year ago by gabrielkg
  0

• Create blast db via FastA upload

  #361 opened a year ago by Don-Isdale
  0

• Genotype table Filtering

  #357 opened a year ago by Don-Isdale
  0

• lightweight genotype service

  #355 opened 2 years ago by Don-Isdale
  0

• Display meta.displayName in Dataset Explorer, if defined, and use it as the Search Filter target.

  #354 opened 2 years ago by Don-Isdale
  1