VCF Dataset directory misnaming causes server to exit
Don-Isdale opened this issue · 0 comments
Don-Isdale commented
The server exited after the following error, which was caused by the VCF dataset directory in $vcfDir not matching the VCF datasetId created in Pretzel via spreadsheet upload.
server log extracts :
/app/lb3app/scripts/vcfGenotypeLookup.bash: line 440: cd: .../vcf/Fieldpea-SeedPurity: No such file or directory
- echo Error: 0 'VCF dataset dir is not configured,' Fieldpea-SeedPurity, PWD=/
child process exited with code 0
cbWrap Error: Error: 0 VCF dataset dir is not configured, Fieldpea-SeedPurity, PWD=/
Error: Error: 0 VCF dataset dir is not configured, Fieldpea-SeedPurity, PWD=/