Dynamic plots of transcripts structure using plotly
(static screenshot)
plPlotTranscripts displays transcripts intron-exon structures and allows to map colors, hover text and annotations to transcripts and/or exons.
For usage instructions and examples, see the vignette online (figures not rendered) or take a look at vignette("plPlotTranscripts").
- GenomicRanges
- plotly
- seriation
- viridis (optional; for color mapping)
- rtracklayer (optional; for importing
gfffiles to GRanges)
library(devtools)
install_github("plger/plPlotTranscripts", build_vignettes=T)
If you get an error during the building of the vignettes, you probably need to install phantomjs first through webshot::install_phantomjs() (alternatively, set build_vignettes=F).