plger
like sailors who on the open sea must reconstruct their ship but are never able to start afresh from the bottom...
Zürich, Switzerland
Pinned Repositories
epiwraps
Wrappers for dealing and plotting with epigenomics data
scanMiR
A set of tools for scanning for miRNA binding sites and working with affinity models
overlapper
A shiny app to explore overlaps between lists
pipeComp
A R framework for pipeline benchmarking, with application to single-cell RNAseq
plPlotTranscripts
Dynamic plots of transcripts structure using plotly
RNAontheBENCH
A benchmarking resource for RNAseq quantification and differential expression analysis methods
scDblFinder
Methods for detecting doublets in single-cell sequencing data
sechm
Wrapper around ComplexHeatmap for SummarizedExperiment objects
SEtools
A R package with tools for working with the SummarizedExperiment class.
tinySEV
Simple shiny SummarizedExperiment Viewer
plger's Repositories
plger/scDblFinder
Methods for detecting doublets in single-cell sequencing data
plger/pipeComp
A R framework for pipeline benchmarking, with application to single-cell RNAseq
plger/RNAontheBENCH
A benchmarking resource for RNAseq quantification and differential expression analysis methods
plger/sechm
Wrapper around ComplexHeatmap for SummarizedExperiment objects
plger/SEtools
A R package with tools for working with the SummarizedExperiment class.
plger/overlapper
A shiny app to explore overlaps between lists
plger/plPlotTranscripts
Dynamic plots of transcripts structure using plotly
plger/tinySEV
Simple shiny SummarizedExperiment Viewer
plger/7q11ngn2
Data and code relative to the study of 7q11.23 copy-number alterations in human Ngn2-driven iNeurons
plger/bigAndSmallOrganoids
Comparison of the scRNAseq of big and small organoids
plger/clustView
shiny viewer for browsing and annotating clusters
plger/diffUTR_paper
Accompanies the diffUTR paper.
plger/iPSCpoweR
transcriptomics-based evaluation of experimental designs for iPSC disease modeling
plger/iSEE_gviz
custom gviz panel for iSEE
plger/material
Material for course STA426 at UZH, Fall Semester 2020
plger/motifmatchr
Fast motif matching in R
plger/OrchestratingSingleCellAnalysis
Content for the OSCA Book.
plger/OSCA.advanced
Advanced steps of the OSCA book
plger/scDblFinder_paper
Code for the scDblFinder paper
plger/SRAdownload
Bash script to download fastq files from the SRA, with priority to european servers