plger/scDblFinder

Issues

• doublets

  #117 opened 2 months ago by zznx
  5

• Wrong dbr.per1k default in bioconductor release

  #119 opened 2 months ago by mdeber
  2

• Doublet removal from 10X Multiome Data

  #118 opened 2 months ago by annepureddy
  1

• Interest in python implementation

  #116 opened 3 months ago by LinearParadox
  4

• install from github error

  #115 opened 3 months ago by junjunlab
  1

• Impossible to set the dbr.per1k argument

  #114 opened 3 months ago by tmontserrat
  3

• Does scDblFinder works in Seurat V5 ?

  #113 opened 5 months ago by lssb
  0

• Error in if (length(expected) > 1 && x > min(expected) && x < max(expected)) return(0): missing value where TRUE/FALSE needed

  #78 opened 2 years ago by twoneu
  18

• Where to run scDblFinder in SCT workflow

  #107 opened 5 months ago by shaln
  1

• Documentation and recommendations regarding the dbr parameter.

  #110 opened 6 months ago by vertesy
  2

• Removing genes from count matrix before doublet detection

  #104 opened 7 months ago by kiwipeel
  3

• Need to `as.matrix()` before `BiocNeighbors::findKNN()`, etc.

  #109 opened 7 months ago by LTLA
  1

• Wild Variability in doublet scores

  #106 opened 7 months ago by markddesimone
  2

• High doublet rate?

  #108 opened 8 months ago by yesitsjess
  5

• SCTransform example in vignette not working

  #105 opened 9 months ago by JesseRop
  1

• Unable to run scDblFinder - "as_cholmod_sparse" does not exist

  #91 opened a year ago by sunnlife1978
  5

• error in serialize(data)

  #73 opened 2 years ago by wbvguo
  6

• Error running scDblFinder

  #100 opened a year ago by chungsai
  4

• how to get layers info after running scDblFinder

  #102 opened a year ago by IrinaVKuznetsova
  2

• Error running scDblFinder

  #99 opened a year ago by dimitrisokolowskei
  7

• "did not converge" Error on cellbender3

  #97 opened a year ago by IrinaVKuznetsova
  8

• Multiple errors: samples argument and Matrix

  #103 opened a year ago by mainyanghr
  4

• error in scATAC

  #95 opened a year ago by LidiaML
  1

• How can I add results to back my original file

  #98 opened a year ago by karabicicim
  2

• Compatibility between Seurat, matrix and scDblFinder versions

  #94 opened a year ago by hennion
  4

• Does ‘Size factors should be positive’ error matter?

  #96 opened a year ago by YiweiNiu
  4

• Ambient RNA Removal

  #93 opened a year ago by meaksu
  4

• Unable to install scDblFinder

  #92 opened a year ago by CCGOGO12
  2

• Doublet filtering in Parse Biosciences data

  #90 opened a year ago by kaanokay
  6

• Running into Grid Error when Running scDblFinder

  #81 opened a year ago by Sandman-1
  2

• Clarify recommended nFeatures/artificialDoublets for scATACseq doublet removal in vignette

  #89 opened a year ago by jeremymsimon
  2

• Error running scDblFinder

  #87 opened a year ago by malonzm1
  3

• non-interpretable error message when providing non-integer as nfeatures argument

  #88 opened a year ago by Fiona713
  1

• Running scDblFinder before or after normalization?

  #86 opened a year ago by DHelix
  2

• doublets mostly differ between scDblFinder and doubletFinder

  #67 opened 2 years ago by gianfilippo
  18

• Unreasonably high doublets rate

  #84 opened 2 years ago by t-nol
  4

• Error in as(counts(sce), "CsparseMatrix")

  #83 opened 2 years ago by akhst7
  1

• scDblFinder error when using aggregateFeatures and knownDoublets

  #82 opened 2 years ago by dottercp
  2

• Request for clarification of dbr and dbr.sd in scDblFinder 1.15.1

  #80 opened 2 years ago by aghr
  4

• Runing scDblFinder before and after removing low QC cells gives different results

  #79 opened 2 years ago by yeroslaviz
  1

• Error when running library(scDblFinder) on jupyter through %%R

  #77 opened 2 years ago by ngvananh2508
  2

• Filter ATAC before running scDblFinder

  #76 opened 2 years ago by ccruizm
  2

• did not converge

  #75 opened 2 years ago by z5ouyang
  5

• I'm having an issues with sctransform not sure

  #74 opened 2 years ago by zvan14
  1

• Installing scDblFinder with conda not working

  #72 opened 2 years ago by dimitrisokolowskei
  6

• Return threshold in output?

  #71 opened 2 years ago by maryellenlynall
  4

• scDblFinder - known doublets

  #70 opened 2 years ago by maryellenlynall
  6

• Unreasonably high doublets rate

  #69 opened 2 years ago by zqun1
  6

• scDbliFinder.sample is different from the sample column specified in `scDblFinder` function `samples` column ?

  #66 opened 2 years ago by Yunuuuu
  17

• Merging multiple samples with scATAC prior to scDblFinder

  #68 opened 2 years ago by rauldiul
  2