plger/scDblFinder

Issues

• Where to run scDblFinder in SCT workflow

  #107 opened 24 days ago by shaln
  1

• Wild Variability in doublet scores

  #106 opened a month ago by markddesimone
  2

• Removing genes from count matrix before doublet detection

  #104 opened 3 months ago by kiwipeel
  3

• error in serialize(data)

  #73 opened a year ago by wbvguo
  6

• SCTransform example in vignette not working

  #105 opened 3 months ago by JesseRop
  1

• Error running scDblFinder

  #100 opened 3 months ago by chungsai
  4

• how to get layers info after running scDblFinder

  #102 opened 3 months ago by IrinaVKuznetsova
  2

• Unable to run scDblFinder - "as_cholmod_sparse" does not exist

  #91 opened 7 months ago by sunnlife1978
  4

• Error running scDblFinder

  #99 opened 3 months ago by dimitrisokolowskei
  7

• "did not converge" Error on cellbender3

  #97 opened 4 months ago by IrinaVKuznetsova
  8

• Multiple errors: samples argument and Matrix

  #103 opened 4 months ago by mainyanghr
  4

• error in scATAC

  #95 opened 4 months ago by LidiaML
  1

• How can I add results to back my original file

  #98 opened 4 months ago by karabicicim
  2

• Compatibility between Seurat, matrix and scDblFinder versions

  #94 opened 5 months ago by hennion
  4

• Does ‘Size factors should be positive’ error matter?

  #96 opened 5 months ago by YiweiNiu
  4

• Ambient RNA Removal

  #93 opened 6 months ago by meaksu
  4

• Unable to install scDblFinder

  #92 opened 7 months ago by CCGOGO12
  2

• Doublet filtering in Parse Biosciences data

  #90 opened 7 months ago by kaanokay
  6

• Running into Grid Error when Running scDblFinder

  #81 opened 7 months ago by Sandman-1
  2

• Clarify recommended nFeatures/artificialDoublets for scATACseq doublet removal in vignette

  #89 opened 8 months ago by jeremymsimon
  2

• Error running scDblFinder

  #87 opened 8 months ago by malonzm1
  3

• non-interpretable error message when providing non-integer as nfeatures argument

  #88 opened 8 months ago by Fiona713
  1

• Running scDblFinder before or after normalization?

  #86 opened 9 months ago by DHelix
  2

• doublets mostly differ between scDblFinder and doubletFinder

  #67 opened a year ago by gianfilippo
  18

• Unreasonably high doublets rate

  #84 opened 10 months ago by t-nol
  4

• Error in as(counts(sce), "CsparseMatrix")

  #83 opened 10 months ago by akhst7
  1

• scDblFinder error when using aggregateFeatures and knownDoublets

  #82 opened a year ago by dottercp
  2

• Request for clarification of dbr and dbr.sd in scDblFinder 1.15.1

  #80 opened a year ago by aghr
  4

• Error in if (length(expected) > 1 && x > min(expected) && x < max(expected)) return(0): missing value where TRUE/FALSE needed

  #78 opened a year ago by twoneu
  9

• Runing scDblFinder before and after removing low QC cells gives different results

  #79 opened a year ago by yeroslaviz
  1

• Error when running library(scDblFinder) on jupyter through %%R

  #77 opened a year ago by ngvananh2508
  2

• Filter ATAC before running scDblFinder

  #76 opened a year ago by ccruizm
  2

• did not converge

  #75 opened a year ago by z5ouyang
  5

• I'm having an issues with sctransform not sure

  #74 opened a year ago by zvan14
  1

• Running scDblFinder deterministic and serial with the 'samples' parameter

  #59 opened 2 years ago by cwoehle
  3

• Installing scDblFinder with conda not working

  #72 opened a year ago by dimitrisokolowskei
  6

• Return threshold in output?

  #71 opened a year ago by maryellenlynall
  4

• scDblFinder - known doublets

  #70 opened a year ago by maryellenlynall
  6

• Unreasonably high doublets rate

  #69 opened a year ago by zqun1
  6

• scDbliFinder.sample is different from the sample column specified in `scDblFinder` function `samples` column ?

  #66 opened 2 years ago by Yunuuuu
  17

• Merging multiple samples with scATAC prior to scDblFinder

  #68 opened 2 years ago by rauldiul
  2

• Doublet numbers still not reproduced even though I used BPPARAM and bpstart

  #62 opened 2 years ago by Moonju411
  2

• Deprecated "dgcMatrix"

  #63 opened 2 years ago by ATpoint
  2

• How to find all features used in training

  #61 opened 2 years ago by XinyeZhao
  1

• Error in installing scDblFinder: object ‘colBlockApply’ is not exported by 'namespace:beachmat'

  #60 opened 2 years ago by amber4mint
  5

• V minor coding bug with multiSampleMode = 'split' and returnType = 'table'

  #58 opened 2 years ago by wmacnair
  0

• size factors should be positive in computeDoubletDensity

  #55 opened 2 years ago by Close-your-eyes
  1

• Possible Bug: cxds2 call does not include artificial doublets in whichDbls

  #57 opened 2 years ago by alexvpickering
  1

• why error ?

  #56 opened 2 years ago by kdyoung100
  4

• xcgboost install

  #54 opened 2 years ago by bjstewart1
  2