Pinned Repositories
rust-boomphf
Fast and scalable minimal perfect hashing for massive key sets
rust-debruijn
De Bruijn graphs in Rust
rust-shardio
Out-of-memory sorting of large datasets map / reduce style processing
async-winit
Use winit like the async runtime you've always wanted
bwa
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
clap
A full featured, fast Command Line Argument Parser for Rust
fastq-rs
hdf5-rs
HDF5 for Rust
hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats
rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
pmarks's Repositories
pmarks/fastq-rs
pmarks/async-winit
Use winit like the async runtime you've always wanted
pmarks/bwa
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
pmarks/clap
A full featured, fast Command Line Argument Parser for Rust
pmarks/hdf5-rs
HDF5 for Rust
pmarks/hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats
pmarks/jax-md
Differentiable, Hardware Accelerated, Molecular Dynamics
pmarks/libdeflater
Rust wrapper for libdeflate 🗜️
pmarks/ndarray-examples
A collection of examples leveraging the ndarray ecosystem.
pmarks/plotly
Plotly for Rust
pmarks/polars
Dataframes powered by a multithreaded, vectorized query engine, written in Rust
pmarks/read-structure-examples
Example Read Structures for BAM <-> FASTQ
pmarks/rust-bindgen
Automatically generates Rust FFI bindings to C (and some C++) libraries.
pmarks/rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
pmarks/rust-htslib
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
pmarks/rust-intel-mkl
Redistribute Intel MKL as a crate
pmarks/salsa
A generic framework for on-demand, incrementalized computation. Inspired by adapton, glimmer, and rustc's query system.
pmarks/samply
Command-line sampling profiler for macOS and Linux
pmarks/simdeez
easy simd
pmarks/sprs
sparse linear algebra library for rust