pmenzel/ont-assembly-snake
Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools.
PythonMIT
Issues
- 0
add NextPolish
#16 opened by pmenzel - 0
add NextDenovo
#15 opened by pmenzel - 0
add modpolish mode from homopolish
#11 opened by pmenzel - 1
python version too high?
#14 opened by splaisan - 0
add rasusa for subsampling
#13 opened by pmenzel - 0
add canu assembler
#12 opened by pmenzel - 1
add CONSENT for polishing
#9 opened by pmenzel - 0
add PEPPER polishing
#10 opened by pmenzel - 0
add filtlong rule for keep-percent option
#8 opened by pmenzel - 0
add support for fastq.gz files
#6 opened by pmenzel - 8
- 0
add hypo hybrid polishing
#2 opened by pmenzel - 0
add unicycler for hybrid assembly
#1 opened by pmenzel - 0
add polypolish
#3 opened by pmenzel - 0
add proovframe
#5 opened by pmenzel - 0
add homopolish
#4 opened by pmenzel