pnlbwh/pnlNipype

Issues

• Python version

  #114 opened 5 months ago by AlbertoImg
  2

• fsl_topup_epi_eddy Issue

  #112 opened 8 months ago by katerendall
  2

• Eddy_openmp

  #110 opened a year ago by kavandeloo
  3

• Generalize makeAlignedMask so it can be reused to register arbitrary image pairs

  #111 opened a year ago by tashrifbillah
  0

• cmd/install.py issue UKFTractography on Apple M2 Pro chip

  #107 opened a year ago by kavandeloo
  2

• nifti_align error on Apple M2 Pro chip

  #106 opened a year ago by kavandeloo
  1

• DIPY unringing no longer works parallely

  #105 opened 2 years ago by tashrifbillah
  0

• Error building ANTs related to MD5

  #104 opened 2 years ago by katiev1997
  1

• Installation Help

  #103 opened 2 years ago by loulou-99
  13

• [BUG] Update antsRegistrationsyn.sh

  #93 opened 3 years ago by tashrifbillah
  1

• Failed solving environment (gxx_linux-64 & gcc_linux-64)

  #94 opened 2 years ago by melissadifabio
  1

• command not found while working through tutorial

  #100 opened 2 years ago by RyanZurrin
  1

• tutorial-pnl has path to slicer version that is no longer there

  #98 opened 2 years ago by RyanZurrin
  1

• Set a missing bvals file message in this block

  #95 opened 2 years ago by tashrifbillah
  1

• Provide T1w in DWI space

  #91 opened 3 years ago by tashrifbillah
  0

• wmparc in T1w space

  #90 opened 3 years ago by tashrifbillah
  1

• Incorrect comments and variable names

  #92 opened 3 years ago by tashrifbillah
  0

• recon-all -xmask

  #86 opened 3 years ago by tashrifbillah
  0

• `applytopup --inindex` inaccurate for multiple b0s

  #79 opened 3 years ago by tashrifbillah
  5

• Provide wmparc in subject space

  #83 opened 3 years ago by tashrifbillah
  0

• BIDS convention naming of topup+eddy corrected data

  #81 opened 4 years ago by tashrifbillah
  8

• Delete *.eddy_outlier_free_data.nii.gz

  #82 opened 3 years ago by tashrifbillah
  1

• Hook up wo_repol_outDir removal to a --debug flag

  #85 opened 3 years ago by tashrifbillah
  0

• --repol for bvals>500

  #80 opened 3 years ago by tashrifbillah
  0

• TYPO

  #74 opened 3 years ago by tashrifbillah
  0

• More check required to determine usability of eddy_cuda

  #78 opened 3 years ago by tashrifbillah
  0

• Add CNN masking install instruction

  #72 opened 4 years ago by tashrifbillah
  1

• Small typo with documentation

  #65 opened 4 years ago by sbouix
  3

• Upgrade WMA to py3, omit PY2BIN variable concept

  #70 opened 4 years ago by tashrifbillah
  2

• maskfilter--> nifti_maskfilter, otherwise clashes with mrtrix/maskfilter

  #67 opened 4 years ago by tashrifbillah
  0

• align.py should not rotate bvecs

  #66 opened 4 years ago by tashrifbillah
  1

• [ENH] Accept space separated params

  #68 opened 4 years ago by tashrifbillah
  1

• unring.py error

  #64 opened 4 years ago by eknyazhe
  1

• [Solution] BRAINSTools installation failure

  #63 opened 4 years ago by tashrifbillah
  0

• [ENH] -hippocampal-subfields can be used with -autorecon3

  #50 opened 4 years ago by tashrifbillah
  1

• Watch fsl_eddy.py and fsl_topup_eddy_epi.py scripts for errors

  #39 opened 4 years ago by tashrifbillah
  3

• apply_topup on primaryMask and secondaryMask

  #58 opened 4 years ago by tashrifbillah
  4

• mkdir() permission

  #60 opened 4 years ago by tashrifbillah
  1

• [update required] nib.load.get_fdata()

  #54 opened 4 years ago by tashrifbillah
  1

• fs.py

  #56 opened 4 years ago by tashrifbillah
  1

• Free-water analysis

  #51 opened 4 years ago by arched1
  5

• Broken link for mktrainingfiles.sh

  #55 opened 4 years ago by eknyazhe
  1

• fsl_eddy fails to write to cli.NonexistentPath

  #48 opened 5 years ago by tashrifbillah
  4

• Need access to nhdr program

  #45 opened 5 years ago by njhunsak
  6

• Revise standalone installation instruction

  #42 opened 5 years ago by tashrifbillah
  3

• Final mask from `pnlNipype/exec/fsl_topup_epi_eddy`

  #46 opened 5 years ago by njhunsak
  7

• No files generated with fs2dwi

  #43 opened 5 years ago by njhunsak
  12

• Correct way for obtaining epimask

  #40 opened 5 years ago by tashrifbillah
  2

• fsl_topup_epi_eddy local variable 'bvals2' referenced before assignment

  #44 opened 5 years ago by njhunsak
  2

• cannot import name 'UKFTractography' from 'plumbum.cmd'

  #41 opened 5 years ago by njhunsak
  2