Suggestion on input bams?

[byemypast]

Hi @polyactis,
First of all, thanks for your great work of Accucopy. It really helps a lot in my low-coverage WGS project.
And I wonder which kind of bam files you would like to suggest as input bams? Such as raw bams after bwa, or sorted bams, or sorted bams with picard-MarkDuplicate procedure?

Thanks,
Junyi

[polyactis]

It should be sorted with duplicates marked. We have updated our documentation https://www.yfish.org/display/PUB/Accucopy#Accucopy-4.1Inputbamfiles Thanks for the good question.

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-- Prof. Yu S. Huang Director of Bioinformatics Drug Discovery and Design Center, State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, CAS http://www.yfish.org/ https://sites.google.com/site/polyactis/

On Thu, Nov 11, 2021 at 4:04 PM 一朝风月 ***@***.***> wrote: Hi @polyactis <https://github.com/polyactis>, First of all, thanks for your great work of Accucopy. It really helps a lot in my low-coverage WGS project. And I wonder which kind of bam files you would like to suggest as input bams? Such as raw bams after bwa, or sorted bams, or sorted bams with picard-MarkDuplicate procedure? Thanks, Junyi — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#13>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAF7C2PYNZS5ZX7CXPY25GDULN2I3ANCNFSM5HZ2TIPQ> . Triage notifications on the go with GitHub Mobile for iOS <https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> or Android <https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>.

[byemypast]

Thank you for your kindly reply and your great work. Have a nice day!