pombase/pombase-chado

Issues

• Update to latest InterProScan - v 5.71-102.0

  #1239 opened 10 days ago
  1

• Remove / hide the MobiDB low complexity predictions from the InterProScan data

  #1238 opened 14 days ago
  1

• The disordered region features from MobiDB sometimes have incorrect types

  #1237 opened 14 days ago
  2

• Add RNAcentral IDs to GPI files

  #1235 opened 18 days ago
  4

• Use segmasker to create low complexity regions

  #1234 opened a month ago
  1

• Add "assigned_by" property in Chado for all modifcations from PomBase

  #1233 opened a month ago
  1

• Modifications, add assigned by column

  #1232 opened a month ago
  6

• GO terms bug

  #1229 opened 18 days ago
  6

• Filter imported duplicates where only evidence code is different

  #1228 opened a month ago
  2

• Add residues to UniProtKB import

  #1227 opened a month ago
  3

• decouple modifications

  #1226 opened 2 months ago
  3

• Odd non filtering cases

  #1225 opened 2 months ago
  10

• MGI xrefs failing GO checks

  #1224 opened 2 months ago
  4

• Filter duplicate modifications from UniProt

  #1223 opened 2 months ago
  33

• Histone modifications are displayed inconsitently

  #1222 opened 2 months ago
  0

• can't locate these

  #1221 opened 2 months ago
  10

• Add Lipidation data from UniProt

  #1220 opened 2 months ago
  10

• Is GO updating?

  #1219 opened 2 months ago
  5

• Attempt to install and run InterProScan

  #1218 opened 20 days ago
  26

• Move manual paralogs from contig file into a TSV file in SVN

  #1217 opened 2 months ago
  1

• Possible modifications to import

  #1216 opened 2 months ago
  14

• Update InterPro to v101.0

  #1215 opened 2 months ago
  3

• more paralogs, I missed

  #1214 opened 2 months ago
  20

• possible additional modifications

  #1213 opened 2 months ago
  4

• create export file for qualititive expression data

  #1212 opened 2 months ago
  2

• Export all publications with exp data for RNA genes

  #1211 opened 2 months ago
  4

• Make annotations in Chado for some of the data from UniProt

  #1210 opened 2 months ago
  6

• Duplicate publication titles - possible PubMed duplicates

  #1209 opened 3 months ago
  3

• Move SO annotations out of contig files

  #1208 opened 3 months ago
  7

• A question for the review I'm writing

  #1207 opened 2 months ago
  21

• Change loading code to handle a date column in ortholog TSV files

  #1206 opened 3 months ago
  0

• Change orthologs TSV reader to handle qualifiers and reference

  #1205 opened 3 months ago
  1

• PMID mentioning gene not shown in leterature section

  #1204 opened 3 months ago
  9

• Include N/C flags in ortholog export files for fusion proteins

  #1203 opened 3 months ago
  3

• map all incoming transit_peptide from uniprot to mitochondrial_targeting_signal

  #1202 opened 3 months ago
  5

• delete coiled-coil from contigs

  #1201 opened 3 months ago
  10

• Missing references for human orthologs of gpd1

  #1200 opened 3 months ago
  37

• Load fails if a term in GO-CAM data is obsolete

  #1199 opened 3 months ago
  4

• Reciprocal check for modifications

  #1197 opened 3 months ago
  6

• Compare SignalP and Phobius (try to get better coverage of transsit peptides and signal peptides)

  #1196 opened 3 months ago
  2

• Create high confidence datasets for ER signal sequence (true positives and true negatives)

  #1195 opened 3 months ago
  12

• Annotated Residues as GO MF extensions, and propagating to other places

  #1194 opened a month ago
  11

• legacy GO error, not oading, not reported

  #1193 opened 4 months ago
  7

• some rpb alleles are conflated

  #1192 opened 4 months ago
  9

• Include manual orthologs in the annotation counts / stats

  #1191 opened 4 months ago
  5

• chance evidence for TMMs

  #1190 opened 4 months ago
  1

• Filter redundant annotations from the same publication

  #1189 opened 3 months ago
  5

• exo5-D176A D176A invalid_error peptide sequence missing

  #1188 opened 4 months ago
  4

• allele name update mcm4-td

  #1187 opened 4 months ago
  3

• UniPathway mapping, not filtered

  #1186 opened 5 months ago
  3