Create a table of protein sequence features and coordinates

Question

Create a table of protein sequence features and coordinates

Opened this issue a month ago · 3 comments

Create a table of protein sequence features and coordinates that can be toggled on and off.
Longer term we might make this table exportable, but at least this way people can copy paste

Answer 1 · 2024-08-28T04:29:25.000Z

I started implementing this but it looks a bit naff so for now it's only available on dev.pombase.org.

There's now a "Show as table" toggle button here:
https://dev.pombase.org/gene_protein_features/SPAC23C4.18c

Answer 2 · 2024-08-28T11:33:19.000Z

I guess the 2 columns are redundant. Should we include evidence and PMID here? Or should we wait for the other panels that we planned? Or could this be adapted for that purpose? Questions, Questions!

Answer 3 · 2024-09-10T19:58:05.000Z

@Antonialock suggestion
2. when clicking on a "category" (row) in the graphic I'd expect to be presented with a table listing all features of that type for the gene of interest, showing e.g. residues, and source of the information