ftp: Protein data files (features and aa composition)
Closed this issue · 6 comments
https://www.pombase.org/data/Protein_data/
Need to decide what is required
| PeptideStats.tsv | 2017-11-23 21:10 | 190K | |
|---|---|---|---|
| Protein_Features.tsv | 2017-10-20 21:35 | 2.8M | |
| aa_composition.tsv | 2017-10-20 21:35 | 333K |
make sure these are copied and updated with the other files
I think we should write out the updated versions of amino acid composition. I think we have been asked for this in the past.
I'm not sure about the protein features. I don't think we need to make this available.
Note that we link to both of these files here:
https://www.pombase.org/downloads/protein-datasets
If we do decide the protein features file is worth keeping, we should
i) remove tmhmms from it because they are in their own file
ii) Rename it as protein domains and families
make sure all currently linked files are up to date
make sure all currently linked files are up to date
They'll be updated nightly from Wednesday night. (I'll check on Thursday)
For now I haven't made any other changes.
If we do decide the protein features file is worth keeping, we should
i) remove tmhmms from it because they are in their own file
The TM domains aren't in that file anymore.
ii) Rename it as protein domains and families
We renamed the gene page section to "Protein domains and features" so how about "protein_domains_and_features.tsv" as the file name?
so how about "protein_domains_and_features.tsv" as the file name?
definitely!
so how about "protein_domains_and_features.tsv" as the file name?
I've changed the load script but not in time for tonight's load.
Note to self: need to fix link in this page after the load: https://www.pombase.org/downloads/protein-datasets
I think this is all done now.