PDB ligand XML files are replaced by CIF
jamesmkrieger opened this issue · 0 comments
jamesmkrieger commented
The function fetchPDBLigands now does not work as a consequence:
IOErrorTraceback (most recent call last)
<ipython-input-2-65da2e637be2> in <module>()
----> 1 ligand_data = fetchPDBLigand('STI')
/home/exx/ProDy-website/ProDy/prody/compounds/pdbligands.pyc in fetchPDBLigand(cci, filename)
95 except IOError:
96 raise IOError('XML file for ligand {0} is not found online'
---> 97 .format(cci))
98 else:
99 xml = inp.read()
IOError: XML file for ligand STI is not found online