Issues
- 11
Any way to predict the structure of a missing domain in state B from a full length structure of state A?
#1820 opened by MargotRiggi - 2
feature request: slice in adaptive ANM
#1826 opened by MargotRiggi - 1
ProDy support for Mac M1 chips
#1913 opened by nbruciaferri - 0
PDB ligand XML files are replaced by CIF
#1870 opened by jamesmkrieger - 10
Re-Install
#1939 opened by rks5854 - 1
searchPfam fails to parse XML
#1933 opened by NicholasMcCarthy - 6
Troubleshooting COMD on ProDy with VMD 1.9.2
#1930 opened by amarye - 9
InSty: NameError: name 'Interactions' is not defined
#1932 opened by TangYiChing - 7
Cannot Find/Import Interactions module
#1924 opened by ZlatomirTodorov - 7
Average spring constant kappa calculation
#1916 opened by Vini161 - 0
ImportError: druggability package was not found
#1917 opened by accibio - 1
Ensemble superpose
#1912 opened by Yago52 - 6
Python 3.12 Support
#1915 opened by xavierholt - 4
PCA Calcmodes
#1911 opened by Yago52 - 3
- 3
Incompatibility with latest SciPy version 1.14.0
#1906 opened by melschneider - 1
float division by zero exception raised if using prody_align with mmCIF files
#1905 opened by nbruciaferri - 0
bad change to mmCIF chain vs segment?
#1902 opened by jamesmkrieger - 5
PRS matrix values more than 1
#1901 opened by Vini161 - 47
cKDTree Problem
#1900 opened by rks5854 - 2
How to set the path for ProDy in VMD
#1898 opened by kiran923 - 12
Bug in PQR parser
#1855 opened by VonBoss - 6
- 3
- 1
How to set the PATH for the ProDy in VMD
#1897 opened by kiran923 - 2
dear all researcher, can you guide me, I have install ProDy in Windows , using pip install -U prody and found an error please see the attached file (Capture-1 and Capture-2) when opened ProDy in VMD, i found this error please see the attached file because am not able to find the path of ProDy (Capture-3 to 5)
#1874 opened by mohad200 - 7
Failed to build prody / ERROR: Could not build wheels for prody, which is required to install pyproject.toml-based projects
#1857 opened by emilyrkang - 0
ADP axes has a problem too
#1873 opened by jamesmkrieger - 0
add iterpose to catdcd
#1863 opened by jamesmkrieger - 0
It's now difficult to get pfam full alignments
#1859 opened by jamesmkrieger - 1
A weird bug of prody 2.4.1 on Python 3.9.0
#1856 opened by JinyinZha - 13
- 3
Adaptive ANM A to B then B to A, and mode issues
#1838 opened by klmcguire - 3
Union on selections in one selstr raises TypeError
#1852 opened by tadsatlawa - 13
Pfam not completely working
#1827 opened by jamesmkrieger - 13
- 3
- 9
error on tutorial Evolution of sequence, structure and dynamics with Evol and SignDy
#1841 opened by Armanda87 - 3
Failure to correctly parse resnames with 4 letters
#1843 opened by karolamik13 - 11
- 1
Adaptive ANM Saving Conformations
#1837 opened by klmcguire - 6
- 4
Frequency from normal mode analysis
#1834 opened by dulalmondal123 - 3
Normal Mode analysis of trajectory file using anm
#1832 opened by dulalmondal123 - 4
Normal mode analysis of protein
#1830 opened by dulalmondal123 - 6
does ProDy support non-numeric resnums?
#1829 opened by timodonnell - 0
HTMD interface
#1828 opened by jamesmkrieger - 5
rmsds of ClustENMD and issue with OpenMM8
#1819 opened by huangjianxiangzju - 3
What is the timescale of mode animations in VMD NMWhiz?
#1821 opened by jpajs - 0
PDBe Unveils New Streamlined FTP Structure and Enhanced Ligand Data Files
#1822 opened by jamesmkrieger