/stream_read_pair

Primary LanguagePython

stream sort pairs

A simple project to stream a sorted bam and return all the reads sorted by read-name within a window

There are two implementations:

  1. stream_sort_pairs.py
  • a python implementation
  1. stream_sort_pairs
  • a c++ implemenation (not stable yet)

to clone run:

git clone --recursive https://github.com/psudmant/stream_read_pair.git