Pinned Repositories
heap
a min heap implementation in c++ designed for use with cython
Ideoplot
Simple R script for plotting ideograms and annotating with bed files.
mrsfast
mrsfast 2.5.0.4 patched for dynamic memory scaling allowing piping in/out of fastqs/sams
RD_pipelines
SNP_calling_pipline
Snakemake + freebayes SNP calling
ssf_DTS_caller
scale space filtering based CNV calling and genotyping
psudmant's Repositories
psudmant/RD_pipelines
psudmant/ssf_DTS_caller
scale space filtering based CNV calling and genotyping
psudmant/SNP_calling_pipline
Snakemake + freebayes SNP calling
psudmant/heap
a min heap implementation in c++ designed for use with cython
psudmant/Ideoplot
Simple R script for plotting ideograms and annotating with bed files.
psudmant/mrsfast
mrsfast 2.5.0.4 patched for dynamic memory scaling allowing piping in/out of fastqs/sams
psudmant/BurgeLabBeerTasting2018
psudmant/freebayes
Bayesian haplotype-based polymorphism discovery and genotyping.
psudmant/MPI_mrsfast_mapping
psudmant/personal_webpage
personal webpage
psudmant/psudmant.github.io
psudmant/pysamstats
A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.
psudmant/pysync
An rsync wrapper for local maintenance of directories stored in remote locations
psudmant/stream_read_pair
psudmant/vcflib
a simple C++ library for parsing and manipulating VCF files, + many command-line utilities
psudmant/wedding_webpage
wedding webpage
psudmant/wnd_DTS