psudmant

Pinned Repositories

heap
a min heap implementation in c++ designed for use with cython
Language:C++1 1 01
Ideoplot
Simple R script for plotting ideograms and annotating with bed files.
Language:R1 1 00
mrsfast
mrsfast 2.5.0.4 patched for dynamic memory scaling allowing piping in/out of fastqs/sams
Language:C1 1 00
RD_pipelines
4 1 18
SNP_calling_pipline
Snakemake + freebayes SNP calling
2 1 10
ssf_DTS_caller
scale space filtering based CNV calling and genotyping
Language:Python4 3 33

psudmant's Repositories

psudmant/RD_pipelines
4 1 18
psudmant/ssf_DTS_caller
scale space filtering based CNV calling and genotyping
Language:Python4 3 33
psudmant/SNP_calling_pipline
Snakemake + freebayes SNP calling
2 1 10
psudmant/heap
a min heap implementation in c++ designed for use with cython
Language:C++1 1 01
psudmant/Ideoplot
Simple R script for plotting ideograms and annotating with bed files.
Language:R1 1 00
psudmant/mrsfast
mrsfast 2.5.0.4 patched for dynamic memory scaling allowing piping in/out of fastqs/sams
Language:C1 1 00
psudmant/BurgeLabBeerTasting2018
Language:HTML1 0
psudmant/freebayes
Bayesian haplotype-based polymorphism discovery and genotyping.
Language:C++
psudmant/MPI_mrsfast_mapping
Language:Python1 02
psudmant/personal_webpage
personal webpage
Language:CSS
psudmant/psudmant.github.io
Language:JavaScript1 0
psudmant/pysamstats
A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.
Language:Python1 0
psudmant/pysync
An rsync wrapper for local maintenance of directories stored in remote locations
Language:Python1 0
psudmant/stream_read_pair
Language:Python1 01
psudmant/vcflib
a simple C++ library for parsing and manipulating VCF files, + many command-line utilities
Language:C++
psudmant/wedding_webpage
wedding webpage
Language:CSS1 0
psudmant/wnd_DTS
Language:Shell1 01