psytky03

psytky03's Stars

• chrisgrieser/alfred-bibtex-citation-picker

  Picker for markdown-based citations and lightweight reference manager for BibTeX libraries.

  Language:JavaScript1488

• ENCODE-DCC/caper

  Cromwell/WDL wrapper for Python

  Language:Python5518

• kevboh/longform

  A plugin for Obsidian that helps you write and edit novels, screenplays, and other long projects.

  Language:TypeScript69132

• silentdot/zotero-markdown-translator

  A simple Zotero translator that creates a Markdown Link when exporting

  Language:JavaScript954

• karkman/crAssphage_project

  Source code for the crAssphage project

  Language:TeX4642

• TCLamnidis/AdmixturePlotter

  An R script to generate plots for ADMIXTURE runs, for multiple K values.

  Language:R153

• ScienceOlbrich/Admixture-Visualization

  Some functions to facilitate plotting the output of PLINK in R.

  Language:R1

• Tom-Jenkins/admixture_pie_chart_map_tutorial

  Tutorial for visualising admixture on a map

  Language:R239

• zhenyisong/zhen.lab

  the scientific reproducible research

  Language:R2

• MareesAT/GWA_tutorial

  A comprehensive tutorial about GWAS and PRS

  859333

• DarkEyes/ipADMIXTURE

  A data clustering package based on admixture ratios (Q matrix) of population structure analysis.

  Language:R41

• suhrig/arriba

  Fast and accurate gene fusion detection from RNA-Seq data

  Language:C++22950

• opain/TWAS-GSEA

  R script that performs gene-set or gene property analysis using TWAS results.

  Language:R316

• retorquere/zotero-better-bibtex

  Make Zotero effective for us LaTeX holdouts

  Language:TypeScript5.5k295

• d2l-ai/d2l-en

  Interactive deep learning book with multi-framework code, math, and discussions. Adopted at 500 universities from 70 countries including Stanford, MIT, Harvard, and Cambridge.

  Language:Python24.4k4.4k

• royfrancis/pophelper

  An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.

  Language:R14438

• cggh/scikit-allel

  A Python package for exploring and analysing genetic variation data

  Language:Jupyter Notebook28951

• evotools/hapbin

  Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)

  Language:C++4317

• brentp/poverlap

  significance testing over interval overlaps

  Language:Python2910

• szpiech/selscan

  Haplotype based scans for selection

  Language:C11633

• bulik/ldsc

  LD Score Regression (LDSC)

  Language:Python662348

• samtools/bcftools

  This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

  Language:C687241

• bioinf-jku/panelcn.mops

  CNV detection tool for targeted NGS panel data

  Language:R169

• bcbio/bcbio-nextgen

  Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

  Language:Python994353

• JoniColeman/gwas_scripts

  Codebook from my GWAS cookbook

  Language:R190111

• genomicsclass/labs

  Rmd source files for the HarvardX series PH525x

  Language:R2k2k

• joepickrell/1000-genomes-genetic-maps

  Genetic maps interpolated to sites in the 1000 Genomes project

  Language:Python4718

• VertebrateResequencing/vr-codebase

  The overall codebase developed and used by the Vertebrate Resequencing group at the Sanger Institute

  Language:Perl3134

• blaze/blaze

  NumPy and Pandas interface to Big Data

  Language:Python3.2k392

• macarthur-lab/gene_lists

  List of gene lists for genomic analyses.

  Language:Python21781