pubseq/bh20-seq-resource

Issues

• Update GenBank sequences

  #123 opened 4 years ago by pjotrp
  1

• Add metadata on workflows

  #36 opened 4 years ago by pjotrp
  1

• Add REST API for list items

  #107 opened 3 years ago by pjotrp
  1

• Add EBI sequences and metadata?

  #72 opened 4 years ago by pjotrp
  4

• Add phylogeny workflow

  #43 opened 4 years ago by pjotrp
  7

• Create test framework and SPARQL examples

  #109 opened 3 years ago by pjotrp
  3

• GenBank sample links have more metadata

  #126 opened 3 years ago by pjotrp
  0

• How do we make sure data is retained?

  #56 opened 3 years ago by pjotrp
  3

• Add information on ONT with NVIDIA Jetson

  #110 opened 3 years ago by pjotrp
  1

• Track updating data here

  #111 opened 4 years ago by pjotrp
  1

• Move to https

  #125 opened 3 years ago by pjotrp
  0

• Normalize identifiers with versions

  #122 opened 4 years ago by pjotrp
  0

• Automated uploads

  #106 opened 4 years ago by pjotrp
  0

• Better sample id management

  #103 opened 4 years ago by tetron
  10

• medata.ttl stops at uploading 24887 public sequences

  #115 opened 4 years ago by pjotrp
  1

• Add news feed

  #80 opened 4 years ago by pjotrp
  2

• Ontology for assemblies

  #94 opened 4 years ago by AndreaGuarracino
  3

• Automated updates for semantic enrichment

  #112 opened 4 years ago by pjotrp
  0

• Pangenome ontology

  #108 opened 4 years ago by pjotrp
  0

• Add seq similarity and overlap to metadata

  #64 opened 4 years ago by pjotrp
  0

• Add remark field to metadata

  #73 opened 4 years ago by pjotrp
  5

• Prepare uploading to EBI and/or NCBI resource (BOSC2020)

  #60 opened 4 years ago by pjotrp
  1

• Create GFA subgraph for pangenome browser

  #81 opened 4 years ago by pjotrp
  3

• Run pipeline on SPARQL query

  #45 opened 4 years ago by pjotrp
  0

• Add pangenome browser

  #46 opened 4 years ago by pjotrp
  4

• Add support for bulk uploads

  #54 opened 4 years ago by pjotrp
  0

• Add Markdown support

  #62 opened 4 years ago by pjotrp
  3

• Add BAM support (after fastq)

  #63 opened 4 years ago by pjotrp
  1

• Move QC analysis to a CWL workflow, keep failing submission +logs for re-analysis later

  #67 opened 4 years ago by mr-c
  1

• wrong predicate for lab_address

  #88 opened 4 years ago by tetron
  2

• Add metadata about the workflows themselves

  #104 opened 4 years ago by mr-c
  1

• Embed CN resource

  #38 opened 4 years ago by pjotrp
  1

• submitterShap error

  #91 opened 4 years ago by tetron
  2

• Demp: list by time stamp

  #96 opened 4 years ago by pjotrp
  1

• Add more clinical metadata

  #77 opened 4 years ago by pjotrp
  2

• Add edit links to documents

  #76 opened 4 years ago by pjotrp
  0

• Add CC0 license as an option

  #66 opened 4 years ago by pjotrp
  1

• Updated virtuoso instance

  #37 opened 4 years ago by pjotrp
  5

• Give nice error messages on qc_metadata fail

  #70 opened 4 years ago by pjotrp
  3

• Adding field buttons are broken on the submit page

  #71 opened 4 years ago by pjotrp
  3

• Search box stopped working (HTML disabled on demo page)

  #65 opened 4 years ago by pjotrp
  2

• Web page: submit button should only be disabled when submitting

  #59 opened 4 years ago by pjotrp
  0

• Filter out list of sequences before building GFA

  #68 opened 4 years ago by mandosoft
  3

• Create a nice website for users

  #44 opened 4 years ago by pjotrp
  2

• Add navigation tabs to web site

  #61 opened 4 years ago by pjotrp
  2

• Move 10,000 JSON files into subdirectory

  #57 opened 4 years ago by pjotrp
  5

• Make Keep links referrable for sequence files and metadata files

  #58 opened 4 years ago by pjotrp
  10

• Compute HASH on inputs

  #55 opened 4 years ago by pjotrp
  1

• Docker image needs 'latest' tag

  #48 opened 4 years ago by leechuck
  1

• Package uploader in pip

  #42 opened 4 years ago by pjotrp
  1