pushpa-itagi

SigProfilerAssignment

Assignment of known mutational signatures to individual samples and individual somatic mutations

Meltos

Meltos: Multi-Sample Tumor Phylogeny Reconstruction for Structural Variants

Griffin

A flexible framework for nucleosome profiling of cell-free DNA

lichee

Multi-sample cancer phylogeny reconstruction

pairtree

Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneity. Pairtree focuses on scaling to many more cancer samples and cancer cell subpopulations than other algorithms, and on producing concise and informative interactive characterizations of posterior uncertainty.

pyclone-vi

Fast method for inferring cancer clonal population structure from SNV data.

SigProfilerAssignment

Assignment of known mutational signatures to individual samples and individual somatic mutations

TitanCNA

Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer

3UTRMutationalMPRA

pushpa-itagi/Griffin

A flexible framework for nucleosome profiling of cell-free DNA

pushpa-itagi/lichee

Multi-sample cancer phylogeny reconstruction

pushpa-itagi/pairtree

Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneity. Pairtree focuses on scaling to many more cancer samples and cancer cell subpopulations than other algorithms, and on producing concise and informative interactive characterizations of posterior uncertainty.

pushpa-itagi/pyclone-vi

Fast method for inferring cancer clonal population structure from SNV data.

pushpa-itagi/SigProfilerAssignment

Assignment of known mutational signatures to individual samples and individual somatic mutations

pushpa-itagi/TitanCNA

Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer