AlexandrovLab/SigProfilerAssignment
Assignment of known mutational signatures to individual samples and individual somatic mutations
PythonBSD-2-Clause
Issues
- 0
median mutation burden per COSMIC signature
#147 opened by eltonjrv - 5
Problems of uploading segmentation file
#146 opened by xiw588 - 2
- 1
file used to plot following plot
#142 opened by wangzunq - 1
some question about exome=true
#143 opened by shenhaizhongdechanrao - 9
- 1
Decompose fit
#140 opened by ishida-md - 12
cant run through a set of samples
#135 opened by LawrenceH622 - 1
- 1
Keyboard Interrupts Ignored
#138 opened by DarioS - 5
Unclear Scope
#134 opened by DarioS - 1
Is there a way to run SigProfilerAssignment on the Experimental Mutational Signatures?
#136 opened by alexanderchang1 - 1
mouse mutational signatures
#133 opened by MariaCartolano - 4
- 4
- 1
- 1
incompatibility with conda when importing pyPDF2
#128 opened by FelixMoelder - 1
SigProfilerAssignment for targeted panels?
#130 opened by MiPSch - 1
How to generate DBS and ID report?
#126 opened by alexgby - 4
SBS signatures with numbers above 96
#122 opened by jasmussen-bcm - 2
UnboundLocalError: cannot access local variable 'samples' where it is not associated with a value
#121 opened by merlevede - 1
SBS96_Decomposition_Plots.pdf is empty
#120 opened by odoveestrella - 4
Exome renormalization seems to miss mutations
#119 opened by pushpa-itagi - 2
Tracking SBS probability for individual mutation?
#118 opened by Kdreval - 4
Error: "The context-96 decomposition plots pages were not able to be generated."
#116 opened by thebrownlife - 4
Signature decomposition error - negative values
#109 opened by maia-munteanu - 3
Explanation of "context" parameter
#112 opened by marcus-r-kelly - 2
Python Version Issue
#111 opened by hpoisner - 0
SV Support Update
#108 opened by mdbarnesUCSD - 3
Connection timed out while downloading the ref genome to install.
#107 opened by AngelGarciaDeLaTorreGarcia - 2
- 3
a qusetion
#104 opened by shenhaizhongdechanrao - 2
Question regarding exclude_signature_subgroups option
#103 opened by sigven - 6
How do I get CN signature?
#102 opened by pyuna - 5
- 2
- 1
Sample data to run?
#100 opened by ytakemon - 3
- 3
- 2
Local reference genome
#83 opened by xander-ho - 1
Parameter collapse_to_SBS96
#92 opened by mdbarnesUCSD - 0
- 2
Some problems with CNsig
#90 opened by SuqinYang - 1
- 2
Difference between the pan-cancer cnv signatures provided by the paper and those provided in the github data
#86 opened by DingTin - 1
- 3
Error after updating: cosmic_fit() got an unexpected keyword argument 'input_type'
#85 opened by cyrusmallon - 2
Difference between CNV signature from SigProfilerAssignment and SigprofilerExtractor
#84 opened by TgenJZhang - 6
- 1
Decompose fit: causes an error `ValueError: cannot convert float NaN to integer`
#72 opened by monagai