Pinned Repositories
maftools
Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
sigminer
🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html
ancestry-from-panel
Ancestry identification from panel sequencing data using off-target reads
FAVORannotator
government.github.com
Gather, curate, and feature stories of public servants and civic hackers using GitHub as part of their open government innovations
HLA-TAPAS
HLA-TAPAS pipeline for HLA association and fine-mapping studies
midasHLA
R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping, analysis of HLA evolutionary divergence as well as HLA-KIR interactions.
oncokb-annotator
Annotates variants in MAF with OncoKB annotation.
sciclone-meta
accessory scripts and documentation related to the sciclone R package at genome/sciclone
Xinan_Man
xiw588's Repositories
xiw588/ancestry-from-panel
Ancestry identification from panel sequencing data using off-target reads
xiw588/FAVORannotator
xiw588/government.github.com
Gather, curate, and feature stories of public servants and civic hackers using GitHub as part of their open government innovations
xiw588/HLA-TAPAS
HLA-TAPAS pipeline for HLA association and fine-mapping studies
xiw588/midasHLA
R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping, analysis of HLA evolutionary divergence as well as HLA-KIR interactions.
xiw588/oncokb-annotator
Annotates variants in MAF with OncoKB annotation.
xiw588/sciclone-meta
accessory scripts and documentation related to the sciclone R package at genome/sciclone
xiw588/Xinan_Man