Pinned Repositories
cni-dcm-convert
SciTran CNI DICOM Conversion Tool
cni-dicom-mr-classifier
Extract metadata from raw DICOM data from Siemens, Philips, or GE.
cni-qa-report-fmri
Run QA metrics (displacement, signal spikes) to create a quality assurance report (png) for an fMRI NIfTI using CNI/NIMS code
DataScienceCourse
This holds iPython notebooks and lecture slides for the Intro to Data Science Master's course I teach at NYU.
dcmstack
DICOM to Nifti conversion with meta data preservation
dl_tutorial
dtiinit
Vistasoft (mrDiffusion) preprocessing pipeline for diffusion MR data
dwi-flip-bvec
Flips bvec x, y, or z
exchange
Flywheel Gear Exchange
fsl-bet
FSL's Brain Extraction Tool (BET)
pvelasco's Repositories
pvelasco/cni-dcm-convert
SciTran CNI DICOM Conversion Tool
pvelasco/cni-dicom-mr-classifier
Extract metadata from raw DICOM data from Siemens, Philips, or GE.
pvelasco/cni-qa-report-fmri
Run QA metrics (displacement, signal spikes) to create a quality assurance report (png) for an fMRI NIfTI using CNI/NIMS code
pvelasco/dcmstack
DICOM to Nifti conversion with meta data preservation
pvelasco/dl_tutorial
pvelasco/dtiinit
Vistasoft (mrDiffusion) preprocessing pipeline for diffusion MR data
pvelasco/dwi-flip-bvec
Flips bvec x, y, or z
pvelasco/exchange
Flywheel Gear Exchange
pvelasco/fsl-bet
FSL's Brain Extraction Tool (BET)
pvelasco/HCPPipelines
pvelasco/HCPpipelinesSingularity
Files related to running the HCP Pipelines using Singularity
pvelasco/heudiconv
A flexible DICOM converter for organizing brain imaging data into structured directory layouts
pvelasco/heudiconv-joss-paper
Repository to prepare HeuDiConv paper
pvelasco/mriqc
Automated Quality Control and visual reports for Quality Assesment of structural (T1w, T2w) and functional MRI of the brain
pvelasco/fsl-fast
FMRIB's Automated Segmentation Tool
pvelasco/fw-gear-dtiinit-diffusion-maps
Generate diffusion maps from dt6
pvelasco/gannet
Gannet analysis of edited MRS data
pvelasco/mrtrix3preproc
mrtrix3preproc runs the mrTrix3 preprocessing pipeline in the diffussion data. It uses FSLs topup when the optional inverted phase encoding files are found, otherwise uses the eddy tool. It performs some other denoising steps, and it can normalize or align to acpc the data
pvelasco/multishell-qspace-gradients
Generate a ready-to-import gradient table for a multi-shell DWI acquisition using Emmanuel Caruyer et al., 2013 uniform schemes in a Siemens scanner.
pvelasco/nifti-montage
Generate montage from NIfTI
pvelasco/nipype
Workflows and interfaces for neuroimaging packages
pvelasco/pfile-mr-classifier
Classification Gear for GE Pfiles
pvelasco/Pipelines
pvelasco/Preprocessing_tools
Issues and tips using CBI preprocessing tools
pvelasco/pybids
Python tools for querying and manipulating BIDS datasets.
pvelasco/SampleData
Code related to the processing of the Winawer lab sample dataset
pvelasco/samplePhysio
pvelasco/siemens_to_ismrmrd
Siemens ISMRMRD converter
pvelasco/SternPythonDataScience2018
Jupyter Notebooks for Data Science with Python 2018 at NYU Stern
pvelasco/SWIdataset