ImportError: cannot import name 'get_all_ties'
soymintc opened this issue · 8 comments
soymintc commented
Hi,
When I create a venv either using python -m venv or conda create, on both python3.7 and python3.9, I get the following ImportError:
Python 3.7.12 | packaged by conda-forge | (default, Oct 26 2021, 06:08:21)
[GCC 9.4.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
m>>> import sorted_nearest
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/juno/work/shah/users/chois7/envs/qu37/lib/python3.7/site-packages/sorted_nearest/__init__.py", line 7, in <module>
from sorted_nearest.src.k_nearest_ties import get_all_ties, get_different_ties
ImportError: cannot import name 'get_all_ties' from 'sorted_nearest.src.k_nearest_ties' (/juno/work/shah/users/chois7/envs/qu37/lib/python3.7/site-packages/sorted_nearest/src/k_nearest_ties.cpython-37m-x86_64-linux-gnu.so)
I've listed only one error message from a python3.7 conda environment, but the same ImportError appears whenever I try to import the package. The environments I tested were newly created, so I believe this is highly likely an error due to packaging... but correct me if I'm wrong. Thanks.
FYI I put in some part of my screen if this helps:
chois7@ceto:envs$ conda create -p /juno/work/shah/users/chois7/envs/qu37 python=3.7
Collecting package metadata (current_repodata.json): done
Solving environment: done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 4.13.0
Please update conda by running
$ conda update -n base -c defaults conda
## Package Plan ##
environment location: /juno/work/shah/users/chois7/envs/qu37
added / updated specs:
- python=3.7
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
ca-certificates conda-forge/linux-64::ca-certificates-2022.5.18.1-ha878542_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.36.1-hea4e1c9_2
libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5
libgcc-ng conda-forge/linux-64::libgcc-ng-12.1.0-h8d9b700_16
libgomp conda-forge/linux-64::libgomp-12.1.0-h8d9b700_16
libnsl conda-forge/linux-64::libnsl-2.0.0-h7f98852_0
libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-12.1.0-ha89aaad_16
libzlib conda-forge/linux-64::libzlib-1.2.11-h166bdaf_1014
ncurses conda-forge/linux-64::ncurses-6.3-h27087fc_1
openssl conda-forge/linux-64::openssl-3.0.3-h166bdaf_0
pip conda-forge/noarch::pip-22.1.1-pyhd8ed1ab_0
python conda-forge/linux-64::python-3.7.12-hf930737_100_cpython
python_abi conda-forge/linux-64::python_abi-3.7-2_cp37m
readline conda-forge/linux-64::readline-8.1-h46c0cb4_0
setuptools conda-forge/linux-64::setuptools-62.3.2-py37h89c1867_0
sqlite conda-forge/linux-64::sqlite-3.38.5-h4ff8645_0
tk conda-forge/linux-64::tk-8.6.12-h27826a3_0
wheel conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0
xz conda-forge/linux-64::xz-5.2.5-h516909a_1
zlib conda-forge/linux-64::zlib-1.2.11-h166bdaf_1014
Proceed ([y]/n)? y
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
#
# To activate this environment, use
#
# $ conda activate /juno/work/shah/users/chois7/envs/qu37
#
# To deactivate an active environment, use
#
# $ conda deactivate
chois7@ceto:envs$ conda activate /juno/work/shah/users/chois7/envs/qu37
(qu37) chois7@ceto:envs$ pip freeze
(qu37) chois7@ceto:envs$ pip install sorted_nearest
Collecting sorted_nearest
Using cached sorted_nearest-0.0.35.tar.gz (1.2 MB)
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing metadata (pyproject.toml) ... done
Collecting numpy
Using cached numpy-1.21.6-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (15.7 MB)
Collecting cython
Using cached Cython-0.29.30-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (1.9 MB)
Building wheels for collected packages: sorted_nearest
Building wheel for sorted_nearest (pyproject.toml) ... done
Created wheel for sorted_nearest: filename=sorted_nearest-0.0.35-cp37-cp37m-linux_x86_64.whl size=4760457 sha256=76381b55ab402d9545ad1a27892e0a7390dd2fa7f9aeb3cf740dda54afd528b3
Stored in directory: /juno/work/shah/users/chois7/.cache/wheels/12/45/3b/46f230ccf3effba9141fc3ff94b3087b049bd88215f8bf8e1f
Successfully built sorted_nearest
Installing collected packages: numpy, cython, sorted_nearest
Successfully installed cython-0.29.30 numpy-1.21.6 sorted_nearest-0.0.35
(qu37) chois7@ceto:envs$ python
Python 3.7.12 | packaged by conda-forge | (default, Oct 26 2021, 06:08:21)
[GCC 9.4.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import sorted_nearest
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/juno/work/shah/users/chois7/envs/qu37/lib/python3.7/site-packages/sorted_nearest/__init__.py", line 7, in <module>
from sorted_nearest.src.k_nearest_ties import get_all_ties, get_different_ties
ImportError: cannot import name 'get_all_ties' from 'sorted_nearest.src.k_nearest_ties' (/juno/work/shah/users/chois7/envs/qu37/lib/python3.7/site-packages/sorted_nearest/src/k_nearest_ties.cpython-37m-x86_64-linux-gnu.so)
soymintc commented
I've managed to work around the problem by installing the 0.0.33 version though
dhynasah-cakir commented
I've managed to work around the problem by installing the 0.0.33 version though
Thank you for sharing your solution. I was having the same problem.
endrebak commented
I'm on it
endrebak commented
I can reproduce:
In [1]: import sorted_nearest
sorted_---------------------------------------------------------------------------
ImportError Traceback (most recent call last)
<ipython-input-1-a0ea713684bf> in <module>
----> 1 import sorted_nearest
~/anaconda3/lib/python3.8/site-packages/sorted_nearest/__init__.py in <module>
5 from sorted_nearest.src.k_nearest import k_nearest_previous_nonoverlapping, k_nearest_next_nonoverlapping
6
----> 7 from sorted_nearest.src.k_nearest_ties import get_all_ties, get_different_ties
8
9 from sorted_nearest.src.tiles import maketiles
ImportError: cannot import name 'get_all_ties' from 'sorted_nearest.src.k_nearest_ties' (/Users/endrebakkenstovner/anaconda3/lib/python3.8/site-packages/sorted_nearest/src/k_nearest_ties.cpython-38-darwin.so)endrebak commented
This is weird. Installing from PyPI errors like above, but installing 0.0.35 with python setup.py install works.
endrebak commented
I uploaded 0.0.37 now, does it work for you? pip install sorted_nearest==0.0.37 --no-cache-dir; python -c "import sorted_nearest"
soymintc commented
@endrebak It works; thank you so much! Now I guess I can use packages that have dependencies for sorted_nearest without errors.
chois7@juno:envs$ python -m venv test
chois7@juno:envs$ source test/bin/activate
(test) chois7@juno:envs$ pip install sorted_nearest==0.0.37 --no-cache-dir; python -c "import sorted_nearest"
Collecting sorted_nearest==0.0.37
Downloading sorted_nearest-0.0.37.tar.gz (1.3 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.3/1.3 MB 12.7 MB/s eta 0:00:00
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing metadata (pyproject.toml) ... done
Collecting numpy
Downloading numpy-1.22.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.8 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 16.8/16.8 MB 117.4 MB/s eta 0:00:00
Collecting cython
Downloading Cython-0.29.30-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (2.0 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.0/2.0 MB 186.6 MB/s eta 0:00:00
Building wheels for collected packages: sorted_nearest
Building wheel for sorted_nearest (pyproject.toml) ... done
Created wheel for sorted_nearest: filename=sorted_nearest-0.0.37-cp39-cp39-linux_x86_64.whl size=2160360 sha256=5456d8b776c6ad371784a4d9f007ed7fcf5990dae00aaf7c93f7867d982a073a
Stored in directory: /juno/work/shah/users/chois7/tmp/pip-ephem-wheel-cache-lajab62b/wheels/c2/d7/00/b1f7073f277f0795d10c2a6f23a8a2b7d7f36091771459746b
Successfully built sorted_nearest
Installing collected packages: numpy, cython, sorted_nearest
Successfully installed cython-0.29.30 numpy-1.22.4 sorted_nearest-0.0.37
WARNING: You are using pip version 22.0.4; however, version 22.1.2 is available.
You should consider upgrading via the '/juno/work/shah/users/chois7/envs/test/bin/python -m pip install --upgrade pip' command.
(test) chois7@juno:envs$ python -c "import sorted_nearest"
(test) chois7@juno:envs$
endrebak commented
No, thanks to you all for reporting :D