Pinned Repositories
alfabis_server
RESTful API for the ALFABIS distributed image segmentation server
ashs
Automatic Segmentation of Hippocampal Subfields
c3d
Convert3D tool
c3d_python
Python bindings for C3D
cmrep
Continuous Medial Representation
crashs
CRASHS: Cortical Reconstruction for Automatic Segmentation of Hippocampal Subfields (ASHS)
greedy
Very fast greedy diffeomorphic registration code
greedy_python
Python bindings for greedy
histoannot
online histology annotation webapp
itksnap
ITK-SNAP medical image segmentation tool
pyushkevich's Repositories
pyushkevich/itksnap
ITK-SNAP medical image segmentation tool
pyushkevich/greedy
Very fast greedy diffeomorphic registration code
pyushkevich/c3d
Convert3D tool
pyushkevich/ashs
Automatic Segmentation of Hippocampal Subfields
pyushkevich/histoannot
online histology annotation webapp
pyushkevich/cmrep
Continuous Medial Representation
pyushkevich/c3d_python
Python bindings for C3D
pyushkevich/crashs
CRASHS: Cortical Reconstruction for Automatic Segmentation of Hippocampal Subfields (ASHS)
pyushkevich/greedy_python
Python bindings for greedy
pyushkevich/upenn_be5370_utils
pyushkevich/itksnap-cdash
Build bot for ITK-SNAP and related
pyushkevich/phas-gears
Pipelines (gears) for PICSL Histology Annotation Server (PHAS)
pyushkevich/tangle-cnn-prod
Production version of tangle cnn
pyushkevich/tau_recon_scripts
Scripts for 3D reconstruction of tau burden maps
pyushkevich/wildcat.pytorch
PyTorch implementation of "WILDCAT: Weakly Supervised Learning of Deep ConvNets for Image Classification, Pointwise Localization and Segmentation", CVPR 2017
pyushkevich/adni_t2_crashs
Scripts for 2024 paper analyzing T2 thickness in ADNI using CRASHS
pyushkevich/alfabis-svc-ashs-prisma
DSS service for the Lund/UPenn 3T Prisma ASHS atlas
pyushkevich/brainmold
Creating 3D printed molds from brain hemisphere segmentations
pyushkevich/cmrep_python
Python bindings for cmrep
pyushkevich/cmrep_skelGUI
pyushkevich/cndr_stats
Penn Image Computing and Science Lab CNDR/InQuery Statistics Package
pyushkevich/digestible
A modern C++ implementation of a merging t-digest data structure.
pyushkevich/docker-ashs-base
ASHS docker container for DSS (experimental)
pyushkevich/exvivoMTLsegmentation_docker
Docker for Laplace constrained MTL segmentation in PICSL 9.4T ex vivo MRI scans
pyushkevich/nerf_experiments
Some small experiments to get a hang of NERFs
pyushkevich/picsl-dss-k8s-server
Kubernetes orchestration for DSS services from PICSL
pyushkevich/picsl-gpu-environment
Documentation for the GPU environment at PICSL
pyushkevich/skeldbm
Skeleton DBM scripts and dockerfiles
pyushkevich/tanglethon-ipynb
Jupyter notebooks for the tanglethon
pyushkevich/tk-docker
A Dockerfile to build a container with our main utilities: c3d, greedy, and cm-rep