Pinned Repositories
alfabis-svc-ashs-harp
ASHS segmentation of T1-MRI with PICSL HarP atlas
alfabis_server
RESTful API for the ALFABIS distributed image segmentation server
ashs
Automatic Segmentation of Hippocampal Subfields
c3d
Convert3D tool
cmrep
Continuous Medial Representation
greedy
Very fast greedy diffeomorphic registration code
histoannot
online histology annotation webapp
itksnap
ITK-SNAP medical image segmentation tool
itksnap-cdash
Build bot for ITK-SNAP and related
nein2018_stats
Statistical analysis for the 2018 Neuroinformatics paper on ITK-SNAP
pyushkevich's Repositories
pyushkevich/itksnap
ITK-SNAP medical image segmentation tool
pyushkevich/greedy
Very fast greedy diffeomorphic registration code
pyushkevich/c3d
Convert3D tool
pyushkevich/ashs
Automatic Segmentation of Hippocampal Subfields
pyushkevich/cmrep
Continuous Medial Representation
pyushkevich/histoannot
online histology annotation webapp
pyushkevich/itksnap-cdash
Build bot for ITK-SNAP and related
pyushkevich/tangle-cnn-prod
Production version of tangle cnn
pyushkevich/wildcat.pytorch
PyTorch implementation of "WILDCAT: Weakly Supervised Learning of Deep ConvNets for Image Classification, Pointwise Localization and Segmentation", CVPR 2017
pyushkevich/adni_t2_crashs
Scripts for 2024 paper analyzing T2 thickness in ADNI using CRASHS
pyushkevich/alfabis-svc-ashs-prisma
DSS service for the Lund/UPenn 3T Prisma ASHS atlas
pyushkevich/alfabis-svc-ashs-prisma-7t
pyushkevich/brainmold
Creating 3D printed molds from brain hemisphere segmentations
pyushkevich/cmrep_skelGUI
pyushkevich/cndr_stats
Penn Image Computing and Science Lab CNDR/InQuery Statistics Package
pyushkevich/crashs
crashs=Cruise+ASHS
pyushkevich/digestible
A modern C++ implementation of a merging t-digest data structure.
pyushkevich/docker-ashs-base
ASHS docker container for DSS (experimental)
pyushkevich/dots-histo-mri-reg
Histology/MRI registration for the UPenn ADRC Dots project
pyushkevich/image-graph-cut
A utility to apply METIS graph partitioning to binary images
pyushkevich/mold_helper
Helper scripts for creating cutting molds
pyushkevich/nerf_experiments
Some small experiments to get a hang of NERFs
pyushkevich/picsl-dss-k8s-server
Kubernetes orchestration for DSS services from PICSL
pyushkevich/picsl-gpu-environment
Documentation for the GPU environment at PICSL
pyushkevich/pwreg
Patch-wise registration (2D)
pyushkevich/skeldbm
Skeleton DBM scripts and dockerfiles
pyushkevich/tanglethon-ipynb
Jupyter notebooks for the tanglethon
pyushkevich/tau_recon_scripts
Scripts for 3D reconstruction of tau burden maps
pyushkevich/tk-docker
A Dockerfile to build a container with our main utilities: c3d, greedy, and cm-rep
pyushkevich/upenn_be5370_utils