Pinned Repositories
alfabis_server
RESTful API for the ALFABIS distributed image segmentation server
ashs
Automatic Segmentation of Hippocampal Subfields
c3d
Convert3D tool
c3d_python
Python bindings for C3D
cmrep
Continuous Medial Representation
crashs
CRASHS: Cortical Reconstruction for Automatic Segmentation of Hippocampal Subfields (ASHS)
greedy
Very fast greedy diffeomorphic registration code
greedy_python
Python bindings for greedy
histoannot
online histology annotation webapp
itksnap
ITK-SNAP medical image segmentation tool
pyushkevich's Repositories
pyushkevich/alfabis_server
RESTful API for the ALFABIS distributed image segmentation server
pyushkevich/alfabis-svc-ashs-harp
ASHS segmentation of T1-MRI with PICSL HarP atlas
pyushkevich/PointSetReg
Simple point set registration code used in ASHS
pyushkevich/tangle-cnn
Automated classification/segmentation of tau tangles in IHC slides
pyushkevich/vergnet_db
ADNI database from Nicolas V
pyushkevich/adni-mri-deface
Repo of tools for ADNI MRI face de-identification project
pyushkevich/adni_fdi_qc
QC web application for ADNI MRI Privacy effort
pyushkevich/alfabis-catalog
Catalog of installed providers and services for the ALFABIS distributed medical image segmentation system
pyushkevich/alfabis-daemon-picsl-ashs
for internal use
pyushkevich/alfabis-provider-picsl
Descriptor of services for PICSL provider site for ALFABIS
pyushkevich/alfabis-svc-example
Example service for ITK-SNAP DSS
pyushkevich/be537
Public stuff for my Medical Image Analysis course at Penn
pyushkevich/dotskel
Skeletonization script for the UPenn HippoGang's dots project
pyushkevich/frangi_dir_chapter
Book chapter on Deformable Image Registration
pyushkevich/fw-indd
Scripts for merging FlyWheel and INDD databases
pyushkevich/image-graph-cut
A utility to apply METIS graph partitioning to binary images
pyushkevich/itksnap-www
itksnap.org website
pyushkevich/LongXiePatchSuperResolution
Long's code for Patch super-resolution based on Jose Manjon's code
pyushkevich/MedicalZooPytorch
A pytorch-based deep learning framework for multi-modal 2D/3D medical image segmentation
pyushkevich/mold_helper
Helper scripts for creating cutting molds
pyushkevich/mtl_exvivo_shooting_template
Scripts for building an ex vivo medial temporal lobe template
pyushkevich/MTLExtraction
Creates 3D printed molds to guide the extraction of the medial temporal lobe of an hemisphere.
pyushkevich/my_little_dss_test
pyushkevich/pwreg
Patch-wise registration (2D)
pyushkevich/tau_maps_brain_2021
Scripts for paper "Three-Dimensional Mapping of Neurofibrillary Tangle Burden in the Human Medial Temporal Lobe" at the time of submission to journal Brain
pyushkevich/tau_recon_scripts
Scripts for 3D reconstruction of tau burden maps
pyushkevich/template
A template Sphinx repo
pyushkevich/uclm_histo_scripts
Scripts for reconstruction of histology and blockface data collected between Penn and UCLM
pyushkevich/VTK
Mirror of Visualization Toolkit repository
pyushkevich/vtk-qt-osmesa-example
Example of a Qt/VTK application that uses off-screen software GL rendering