Writing segmentation/label file using third party program
AlistairMcCutcheon opened this issue · 1 comments
AlistairMcCutcheon commented
I have a model that performs segmentation. I'd like to present the output of this model to the user using itk-snap. My approach will be to write a workplace folder, with it pointing to the main image as well as the segmentation file. The workplace file is in xml and seems straightforward to modify. The segmentation file is not human readable. How would you suggest I go about creating a segmentation file using a third party program?
pyushkevich commented
Hi Alistair,
This the option that is available if you want your model to be runnable
from ITK-SNAP: https://alfabis-server.readthedocs.io/en/latest/
If you just want to create ITK-SNAP workspaces, use itksnap-wt (it is in
the ITK-SNAP folder and has command-line documentation)
Thanks,
Paul
…On Sat, Dec 3, 2022 at 9:58 PM AlistairMcCutcheon ***@***.***> wrote:
I have a model that performs segmentation. I'd like to present the output
of this model to the user using itk-snap. My approach will be to write a
workplace folder, with it pointing to the main image as well as the
segmentation file. The workplace file is in xml and seems straightforward
to modify. The segmentation file is not human readable. How would you
suggest I go about creating a segmentation file using a third party program?
—
Reply to this email directly, view it on GitHub
<#72>, or unsubscribe
<https://github.com/notifications/unsubscribe-auth/AAJPEW46THVWFE2JB2IXL6DWLQCG7ANCNFSM6AAAAAASTCUDAE>
.
You are receiving this because you are subscribed to this thread.Message
ID: ***@***.***>