increase minimum-quality default to 19?

Question

increase minimum-quality default to 19?

Closed this issue 8 years ago · 2 comments

I think going with a minimum-quality default of 19 makes sense here, as this data is intended to go directly into deblur and that's what's used in the deblur paper. I don't see a real reason to match the QIIME 1 default of 3 here, I think it's too low. Is there another motivation to keep it at 3?

Answer 1 · 2017-01-19T18:01:54.000Z

Just to match the existing defaults

Answer 2 · 2017-01-19T19:55:54.000Z

Are you good with changing? I think it's more important to match the deblur paper than QIIME 1 at this point.