Pinned Repositories
3D
BRAKER_singularity
Singularity def file template for BRAKER
cerberus
configs
Config files used to define parameters specific to compute environments at different Institutions
CutRunTools2_singularity
datasharing
The Leek group guide to data sharing
DLC_singularity
genetics
R code for plot figure1 of "Interrogating the Functions of PRDM9 Domains in Meiosis"
RDCO
code
sequencing-tricks
qiyubio's Repositories
qiyubio/BRAKER_singularity
Singularity def file template for BRAKER
qiyubio/3D
qiyubio/cerberus
qiyubio/configs
Config files used to define parameters specific to compute environments at different Institutions
qiyubio/CutRunTools2_singularity
qiyubio/datasharing
The Leek group guide to data sharing
qiyubio/DLC_singularity
qiyubio/docs
TensorFlow documentation
qiyubio/genetics
R code for plot figure1 of "Interrogating the Functions of PRDM9 Domains in Meiosis"
qiyubio/GeomxTools
Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.
qiyubio/HiC-Pro
HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
qiyubio/RDCO
code
qiyubio/sequencing-tricks
qiyubio/mamba
The Fast Cross-Platform Package Manager
qiyubio/MiniCPM-V
MiniCPM-Llama3-V 2.5: A GPT-4V Level Multimodal LLM on Your Phone
qiyubio/nf-co.re
Code and files for the main nf-core website.
qiyubio/PacVim
qiyubio/pymc
Bayesian Modeling and Probabilistic Programming in Python
qiyubio/r4ds
R for data science
qiyubio/readthedocs
Documentation for the Google Genomics cookbook.
qiyubio/rtea
qiyubio/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
qiyubio/scvi-tools
Deep probabilistic analysis of single-cell omics data
qiyubio/TRiCoLOR
Tandem Repeats Caller for LOng Reads