/HGTector

Genome-wide prediction of horizontal gene transfer events based on Blast hit distribution statistics

Primary LanguagePythonBSD 3-Clause "New" or "Revised" LicenseBSD-3-Clause

HGTector2

HGTector2 is a completely re-engineered software tool, featuring a fully automated analytical pipeline with smart determination of parameters which requires minimum human involvement, a re-designed command-line interface which facilitates standardized scientific computing, and a high-quality Python 3 codebase.

HGTector is a computational pipeline for genome-wide detection of putative horizontal gene transfer (HGT) events based on sequence homology search hit distribution statistics.

Documentation

What's New

Installation

Tutorials

References

License

Copyright (c) 2013-2020, Qiyun Zhu and Katharina Dittmar. Licensed under BSD 3-clause. See full license statement.

Citation

Zhu Q, Kosoy M, Dittmar K. HGTector: an automated method facilitating genome-wide discovery of putative horizontal gene transfers. BMC Genomics. 2014. 15:717.