Pinned Repositories
ANCOM
R scripts for Analysis of Composition of Microbiomes (ANCOM).
antibiotic_redundancy
Analyses for a project assessing functional redundancy w/ antibiotic exposures in infants
archive
Code from previous projects that are not actively used
awesome-deep-learning-papers
The most cited deep learning papers
CBEA
R package for performing enrichment analysis for microbiome relative abundance data using the CBEA approach.
CBEA_analysis
Reproducible analyses for manuscript "CBEA: Competitive Balances for Taxonomic Enrichment Analysis"
infant_metabolome_microbiome
Reproducible analyses for the paper "Associations between the gut microbiome and the metabolome in early life"
microbesim
R package wrapper for various Monte Carlo simulations schema for microbiome relative abundance data
MZILN
Conditional regression based on a multivariate zero-inflated logistic normal model for microbiome relative abundance data
qpmnguyen's Repositories
qpmnguyen/CBEA
R package for performing enrichment analysis for microbiome relative abundance data using the CBEA approach.
qpmnguyen/CBEA_analysis
Reproducible analyses for manuscript "CBEA: Competitive Balances for Taxonomic Enrichment Analysis"
qpmnguyen/archive
Code from previous projects that are not actively used
qpmnguyen/qtils
Utilities for working with R packages.
qpmnguyen/BCClong
qpmnguyen/budget_app
Budget app using R Shiny and sqlite
qpmnguyen/celestial_calculations
Following Celestial Calculations by J. L. Lawrence (MIT Press)
qpmnguyen/cescalate
WIP: Dose escalation exploration
qpmnguyen/darn2
Directed Acyclic R Script Networks
qpmnguyen/filepins
Experimental package to perform explicit versioning of specific R scripts and markdown files.
qpmnguyen/gtsibble
Geo-temporal Data Frames and Tools
qpmnguyen/in_all_likelihood
Solutions and notes for "In all likelihood" by Yudi Pawitan
qpmnguyen/media-tracker
Basic media tracker built using Python Shiny
qpmnguyen/microbe_set_trait
Analyses for constructing apriori microbe sets using trait databases
qpmnguyen/microbe_trait_manuscript
Manuscript repository
qpmnguyen/missing
Prototype unified package for missing data handling in clinical trials
qpmnguyen/presize
Precision Based Sample Size Calculation
qpmnguyen/qn_adventofcode
Advent of code submissions, mostly in Julia
qpmnguyen/qpmnguyen
qpmnguyen/qpmnguyen-site
Source for my personal website
qpmnguyen/recRandom
Recipe randomizer
qpmnguyen/SampleSizeReport
Report systems for sample-size estimations
qpmnguyen/simutb
Simulation Toolbox
qpmnguyen/stats_knowledge
Personal gitbook for information on statistical models
qpmnguyen/TFLtargets
WIP: Factories for generating TFLs using {targets} and a titlefootnote file.
qpmnguyen/thesis
Mah thesis
qpmnguyen/tidycompositional
Compositional data analysis procedures translated to the {tidymodels} ecosystem.
qpmnguyen/tidystepwise
Performing stepwise regression using the {tidymodels} framework.
qpmnguyen/upswing_downswing
Analysis repo for upswing/downswing analysis of COVID forecasters
qpmnguyen/visR
A package to wrap functionality for plots, tables and diagrams adhering to graphical principles.