qpmnguyen

Biostatistician

Regeneron Pharmaceutical

Pinned Repositories

ANCOM
R scripts for Analysis of Composition of Microbiomes (ANCOM).
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antibiotic_redundancy
Analyses for a project assessing functional redundancy w/ antibiotic exposures in infants
Language:Shell0 1 00
archive
Code from previous projects that are not actively used
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awesome-deep-learning-papers
The most cited deep learning papers
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CBEA
R package for performing enrichment analysis for microbiome relative abundance data using the CBEA approach.
Language:R5 2 90
CBEA_analysis
Reproducible analyses for manuscript "CBEA: Competitive Balances for Taxonomic Enrichment Analysis"
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infant_metabolome_microbiome
Reproducible analyses for the paper "Associations between the gut microbiome and the metabolome in early life"
Language:R3 2 11
microbesim
R package wrapper for various Monte Carlo simulations schema for microbiome relative abundance data
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MZILN
Conditional regression based on a multivariate zero-inflated logistic normal model for microbiome relative abundance data
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qpmnguyen's Repositories

qpmnguyen/infant_metabolome_microbiome
Reproducible analyses for the paper "Associations between the gut microbiome and the metabolome in early life"
Language:R3 2 11
qpmnguyen/microbesim
R package wrapper for various Monte Carlo simulations schema for microbiome relative abundance data
Language:R1 1 00
qpmnguyen/ANCOM
R scripts for Analysis of Composition of Microbiomes (ANCOM).
Language:R0 0 00
qpmnguyen/antibiotic_redundancy
Analyses for a project assessing functional redundancy w/ antibiotic exposures in infants
Language:Shell0 1 00
qpmnguyen/nprbooksR
Data package for NPR's Books We Love (formerly NPR Book Concierge)
Language:R0 1 00
qpmnguyen/TaxaSetsUtils
R package providing utilities for working with taxonomic sets for microbiome data
Language:R0 1 00
qpmnguyen/cilr_manuscript
Manuscript repo for cILR: Competitive Isometric Log Ratio
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qpmnguyen/covid_deaths_comparison
Comparing death data across different sources
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qpmnguyen/elo_presidente
Predicting election outcomes using Elo rankings from polling results
Language:Julia1 0
qpmnguyen/epiprocess
Tools for basic signal processing in epidemiology.
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qpmnguyen/ExtSparseDOSSA2
Extension to SparseDOSSA2 simulation approach. Provides more complex scenarios and conversions.
qpmnguyen/gatk_somatic_tutorial
Tutorial for using gatk to do somatic variant calling on normal samples.
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qpmnguyen/GeneSets.jl
Gene set analysis methods in Julia
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qpmnguyen/Microbiome.jl
For analysis of microbiome and microbial community data
qpmnguyen/microbiome_intro
Training materials for future Hoen Lab members
qpmnguyen/miniblog
Repository for analyses for miniblog posts
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qpmnguyen/onion_classif
Classifying onion and nottheonion article headlines using a variety of deep learning models
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qpmnguyen/peak-bloom-prediction
Template repository for the GMU cherry blossom peak bloom prediction competition.
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qpmnguyen/poster_presentations
Directory for all generated posters and presentations
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qpmnguyen/pyCBEA
CBEA implementation in Python
qpmnguyen/pyloseq
Phyloseq-like data structures in Python for microbiome data analysis
qpmnguyen/qn-statistical-rethinking
Solutions in R and Julia for Statistical Rethinking by Richard McElreath (2nd ed.) by Quang Nguyen
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qpmnguyen/qn_tidytuesday
Scripts for tidy tuesday graphs by me
Language:R
qpmnguyen/qpn-rustbioalg
Doing some bioinformatics with rust. Not real software.
qpmnguyen/qpn_nlp
Exploring NLP methods
Language:Julia
qpmnguyen/rna_seq_pipeline
Bulk RNA-seq analysis sample pipeline
Language:Python
qpmnguyen/sc2meta
Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data"
qpmnguyen/traitsigdbr
Trait-based signatures for microbiome relative abundance data
qpmnguyen/variant_estimation
Estimating prevalence of the new COVID-19 variant using hierarchical bayes
Language:R1 0
qpmnguyen/video_game_length
Analyzing the relationship between time-to-beat, ratings, and sales across time