r3fang

@ZhuangLab at HarvardCambridge, MA

Pinned Repositories

alignTools.C
Implementation of sequence alignment (C).
Language:C3 1 30
CRESTseq
CREST-seq peak calling.
Language:C++3 1 00
MERlin
MERFISH Decoding Pipeline
Language:Python3 0 01
SnapATAC
Analysis Pipeline for Single Cell ATAC-seq
Language:R301 14 255125
SnapTools
A module for working with snap files in Python
Language:Python35 2 3621
snATAC
<<------ Use SnapATAC!!
Language:Python25 4 1010
TaFuCo
Targeted Fusion Caller (C)
Language:C3 2 01

r3fang's Repositories

r3fang/SnapATAC
Analysis Pipeline for Single Cell ATAC-seq
Language:R301 14 255125
r3fang/SnapTools
A module for working with snap files in Python
Language:Python35 2 3621
r3fang/snATAC
<<------ Use SnapATAC!!
Language:Python25 4 1010
r3fang/alignTools.C
Implementation of sequence alignment (C).
Language:C3 1 30
r3fang/CRESTseq
CREST-seq peak calling.
Language:C++3 1 00
r3fang/MERlin
MERFISH Decoding Pipeline
Language:Python3 0 01
r3fang/TaFuCo
Targeted Fusion Caller (C)
Language:C3 2 01
r3fang/am_geneBasis
prediction of marker genes for cell typing and spatial gradients from scRNA-seq
Language:Jupyter Notebook0 0 00
r3fang/cellpose
a generalist algorithm for cellular segmentation
Language:Jupyter Notebook0 0
r3fang/gcsfuse
A user-space file system for interacting with Google Cloud Storage
Language:Go0 0
r3fang/home
Language:HTML1 02
r3fang/merfish_designer
A python3 pipeline for MERFISH probe design.
Language:Jupyter Notebook0 01
r3fang/merfishdecoder
MERIFSH decoder
1 0
r3fang/merlin-parameters-example
Example MERlin analysis parameters for processing MERFISH data
0 0
r3fang/subpixal
Subpixel cross-correlation image alignment of astronomical images
Language:Python0 0