Issues
- 1
createGmatFromMat ERROR
#258 opened by gengbaobao - 2
Homer run error
#218 opened by leeanapeters - 0
- 2
failed to read alignments from BAM
#247 opened by kunalkathuria - 0
Homer
#259 opened by gengbaobao - 0
'CEMBA180305_2B.snap' no snap object in "Integrative Analysis of 10X and snATAC"
#257 opened by aminbensaad - 5
Error" 'rBind' is defunct.
#234 opened by AndresLugoCas - 4
Installation issues
#238 opened by darlene003 - 0
snapRbind uses defunct function rBind
#255 opened by imran-aifi - 0
Troubles with homer findknownmotifs.pl
#254 opened by sanjanabhatnagar - 0
Troubles while creating snap file with bam
#253 opened by HieuNg1598 - 2
The documents in http://renlab.sdsc.edu/r3fang/share/Fang_2019/MOs_snATAC can't be downloaded. The links aren't accessible
#235 opened by ifyouaresober - 0
- 0
Merging multiple fragment samples
#251 opened by seoyeonoh12 - 1
Error in createSnap.default
#250 opened by khain2650 - 0
Transitioning from v1 to v2 SnapATAC
#249 opened by mej54 - 0
snaptools for plant genome
#248 opened by 304243504 - 0
converting signac object to snap atac
#246 opened by hamidsta - 0
General package installation/download difficulty - especially interopability with seurat
#245 opened by BradleyH017 - 1
Error in addBmatToSnap
#223 opened by strawberry789 - 1
GM and PM not found by snapAtac
#243 opened by rLannes - 1
[Error: Cholmod error 'problem too large']: when integrating multiple matrix using snapRbind function
#244 opened by murphchuyi - 2
Weird promoter ratio versus log10(UMI) curve
#222 opened by strawberry789 - 1
Drosophila melanogaster correspondence for mouse "gencode.vM16.gene.bed" to run Gene-based annotation
#221 opened by strawberry789 - 1
Can't install the package in r 3.5
#229 opened by Xinyi371 - 0
Error in calGmatFromMat()
#242 opened by swttalyan - 0
gencode.vM16.gene.bed download
#241 opened by linhch5 - 1
snaptools align-paired-end error
#225 opened by ZHIDIHUAYUAN - 0
error In runKNN()
#240 opened by 1221li - 0
HDF5-Diag issue
#239 opened by ldudley7 - 0
runEigDecomp function results in NaN
#237 opened by marvinquiet - 1
error ‘rBind’ in addBmatToSnap
#236 opened by ifyouaresober - 0
Update the Snapatac
#233 opened by tzhu-bio - 0
i cannot import phenograph because of this
#232 opened by vinu2004 - 0
- 0
Unmet Dependencies
#230 opened by kgj1234 - 0
runDiffusionMapsExtension: peat not pmat??
#228 opened by Fiona-Pan - 2
Bug in runJaccard()
#214 opened by kridsadakorn - 0
can I use this for scTHS seq?
#227 opened by ShaeLei - 0
How to use Nystrom
#226 opened by JingxinGuo - 0
Removing b'chr1' from peak files generated from macs2 in R for homer/chromVar
#220 opened by kendyhoangucsc - 0
error in runDiffusionMaps
#219 opened by tianchen2019 - 2
runChromVAR() error: Error in isVirtualExt(exti) :
#211 opened by zhaoliyang0429 - 0
Possible bug in snaptools dex-fastq, on snATAC dataseq generated with latest 10X snATAC V1.1 chemistry
#217 opened by Qi-Yang-Bioinfo - 0
- 0
atac_v1_adult_brain_fresh_5k_singlecell.csv
#215 opened by sebboegel - 1
runMagic problem too large
#213 opened by hejing3283 - 0
Using scrublet with SnapATAC
#212 opened by trinevd - 1
- 0
sorry I opened this by mistake
#209 opened by shokohirosue